Thalassiosira pseudonana: THAPS_25356
Help
Entry
THAPS_25356 CDS
T01078
Name
(RefSeq) predicted protein
Organism
tps
Thalassiosira pseudonana
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SGF29_Tudor
Motif
Other DBs
NCBI-GeneID:
7442967
NCBI-ProteinID:
XP_002295560
JGI:
25356
UniProt:
B5YLR1
LinkDB
All DBs
Position
18:complement(335248..340351)
Genome browser
AA seq
1399 aa
AA seq
DB search
MSNAAVGPLDCCFRRQRRPTLPFKLQFVIMIVVILIIAGQRQRQQRGQKTAVTGSLQPTI
DATMSNSNNNNNMMMPGMDGGGNQNAQQNQMPPNGSPAARHQQSQPSQQHNMMNQSMGLP
PNLVNANIVMGGSNVMGTNNAPGISVGVSMNNVNGVGVNGGIPGTGGMNFNMMNMQNLSN
INRNLLMSQQQAVQAAAMARQAALNGGMGDMNGMQGSGGGGGQGRVPIHVPQGQMQNGQQ
QMQPNQMQNGQQQMQSNQMQNGQQQMQSNQMQNQMQNGQQHMQSNQMQNGQQQMQSNQMQ
NGQPNQQQQQGNISSSSSMGWNNQSPPSTNNSSNMMMMQNQLGQNQMNQQQQGGGQSQQQ
QAGRANGSFTGIQQLSAMGGRSQSNSSSQSQQQQQQHRGSFTGVHQIGNMGERNQSVGSH
HSGGGQQGGSQQGTPQQGILGQQQGGGQGPQVNQQAAHQQQQAQAQAWFLYQQQQQAQAL
IPNSIQPYQTTTAPQSQQPPPQNSPPSNPNQQNLNQPQHLTQGQQVSSIQHQQQQQRMQL
QQLAMLQNQEQKRRLSTSQQQLLAKQQARRNSHSQKLQSQNSQMNQIMQNNNNSNNTTMG
NNMGFQVQAVQTMNNQQQNNYGQGHQIMSPHSQHSVGGGSSRPSSTQPGAIRRQSATGTP
MSQPMQRPPSAHSRPPSVQPLHPLSTLTRSSSSQPPQSSLVYPNYQSPGLQQQALGPGNP
MSFNFYNPMSTLSKNTGDQSNMNAQANALQKASSFSSPNQPCSSVSLQNAAAQMTHTNND
NVLTPNIAALLHQSLASAQAPIAAATKPDRCSKESSVNHGASASNQAKYKLKAQQTMTSI
SALSGGTSTTTGTSTSNTVGAVHHQYHPNHNSALSNEDVLQLANACPVEQKIVWVARQLL
SSAGTNGFTRATSTVQRLKRQRARAKHKSEERGSTEKDDTIDQEALKAETFNVRLAQRMA
TELKQGLQFTNLMIDVLRSIIGEIDPLNPLLEVQPPLVADPMDPSSWTSPLAYLPVVDSM
SSISTIPFTNSTSMKKLLEGVSFSSASGGSSNASKGSYNGGQNHSPTPRNPLSASDARAS
GMGQNDEAETVADGNPNGSTLRKLRKGGGHAAETDPALIEMVSNDDNKKLTKKELSYRLF
EATRFRSLDAGDYVCAKMASHDLWILARVVQQWNAVNIPHRQMMDLSEAKRNALFKEKVY
IQDNDDYNGDTRNARAVDRQHVLPLPKTFTEASEWGARSRKGCRVYAMYPHTTALYCASV
VDNHTYCRNQDDIIVVEFDGDEDEFGNIPHRHIPARFVTMMPRESSSYKRKRKSITAVGG
EFKRRPSSSSKPVVQRHDTIDQMLLEMYGDSAANALDKMDNDLLGGGFNMTPPLTPGVNE
ATVKSQTSDNNSHGKTPHS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcagctgttggccctctggactgctgttttcgccgccagcggagacctaca
ctgcctttcaagctgcagtttgtcattatgatagtagtcatattaataatagcgggacaa
agacagcgacaacaacgtggacagaagacggctgtgactggtagcttacagccaacaatc
gatgcaacgatgagtaatagcaataataacaacaacatgatgatgccaggaatggatggc
ggtggcaatcaaaacgcacaacagaatcagatgcctcccaacggttctcctgctgctcgt
catcaacaatctcaaccgtcacaacagcacaacatgatgaatcaatccatgggcctccct
cccaacctagtcaacgccaatatcgtaatgggtggcagcaatgtaatgggcacgaacaac
gctcccggcatcagcgtaggcgtcagcatgaacaacgtcaacggcgtcggtgtaaacggc
ggcataccaggcacaggagggatgaacttcaacatgatgaacatgcaaaatctgagcaac
atcaatcgcaaccttttgatgagccaacagcaggccgtacaggccgcggcgatggctcgg
caggctgcgttgaatggagggatgggcgatatgaatggaatgcaaggcagtggtggtgga
ggaggacaggggagagttccgattcatgttccccagggacagatgcagaatggacagcag
cagatgcaacccaatcagatgcaaaatggacagcagcagatgcaatctaatcagatgcag
aatggacaacagcagatgcaatccaatcagatgcagaatcagatgcagaatggacaacag
cacatgcaatccaatcagatgcagaatggacaacagcagatgcaatccaatcagatgcag
aatggacaacccaatcaacagcaacaacaggggaacatttcatcgtcttcttccatggga
tggaataatcagtctcctccttcgacaaacaacagcagcaacatgatgatgatgcagaac
caattgggtcagaatcaaatgaaccaacaacagcagggaggaggtcaatctcaacaacaa
caggctggcagagccaatgggtcgtttacaggaatacagcagctctcggcaatgggggga
agaagtcaaagcaatagtagttctcaatctcaacaacaacagcaacagcatagaggttcg
tttacgggagtacaccagattgggaacatgggtgaacgaaatcagagtgttggttctcat
cacagtggtggtggacagcagggaggaagtcagcaaggaacgccacagcaagggatactt
ggccaacaacaaggaggagggcaaggacctcaagtcaatcagcaagctgcgcatcaacag
cagcaggctcaagctcaggcatggtttttgtatcaacagcagcagcaagcacaagctctc
atcccaaactcgatccagccttatcaaactactaccgctcctcaatcgcaacaacctcca
cctcaaaacagcccaccatctaatccaaatcaacagaatctcaaccagccacaacatcta
acccaaggacaacaggtatcctccatccaacatcagcagcagcaacaaagaatgcaactc
caacaactcgccatgcttcaaaatcaagagcaaaaacgtagattgagtaccagtcaacaa
cagcttctcgctaagcagcaggcgaggaggaacagccacagtcagaagcttcagagtcag
aacagtcaaatgaaccaaataatgcagaataataacaacagcaacaataccacgatgggg
aacaacatgggatttcaagttcaggcagttcagacaatgaacaatcaacagcagaacaac
tatggacagggacatcagattatgagtccacattcacagcacagtgttggtggaggtagc
tcacgtccatcttcaacgcaacccggggccatccgacgtcaatctgccacgggtactccc
atgtcacaaccaatgcaacgtccaccctctgctcattcacgtcctccgtcagttcagcca
ctgcaccctctctctacgttgacacgttcctcgtcgtcacagcctccccagagctctctc
gtgtatcctaattatcaatcgccaggactgcagcaacaggctttgggtccaggtaatccg
atgtcgttcaacttctataatccaatgtcgactttgtcaaagaatactggcgatcagtcg
aatatgaatgcacaagctaatgctttgcaaaaggcatcttccttttcatcgccaaatcaa
ccttgctcctctgtgtcattgcaaaatgccgcagcacaaatgacacacacaaacaatgac
aatgtgctcactccaaacatagcagctcttttgcatcaatcgttggcctcggcacaagca
ccaatcgccgcggcgaccaaacccgatcgttgtagcaaggaatctagcgtgaaccacggg
gcgtccgcgtccaatcaggcgaagtataagttgaaagcacaacagacaatgacatctatt
tcggctctttcgggtggaacgtctacaactactggaacctccacttccaacactgtgggt
gctgttcatcatcaataccaccccaatcacaactccgcacttagtaacgaagacgttctc
caacttgcaaatgcatgccccgtagaacagaagattgtttgggtagcgaggcaactcttg
agttcagcgggtacgaatggcttcacacgtgccacgtccacagtacaacgactcaaacgt
caacgagctcgtgccaaacataaatcggaggaaagaggctcaacagaaaaggatgatacc
atcgatcaggaagcgttgaaggcggagactttcaacgtgcgtcttgctcagaggatggca
accgaactgaagcaggggttgcaatttaccaacctcatgatagatgtattgcgatctatt
attggagagattgacccgctgaatccgttgctggaagttcagccacctcttgttgctgat
ccgatggatccatcttcgtggacatccccccttgcctatcttccagttgtagacagcatg
tcatccatatcaacgattccattcacgaattctacttctatgaaaaaattgttggaagga
gtcagcttttcatctgcgagtgggggatcttctaatgcatccaagggcagttataatggg
ggacaaaatcattcgccaacgccaaggaatcctctcagtgctagtgatgctcgtgcctcg
ggtatgggacaaaatgacgaggcagagactgtggcagacggcaaccccaacggctcaacg
ttgcgcaagttaaggaagggtggtggccacgccgccgagacagatcccgccttgatagaa
atggtcagcaacgacgacaacaagaaactgacgaagaaggagttatcttaccgtcttttt
gaggctactcgcttccgttctttggatgcgggtgattatgtatgtgctaagatggcaagc
catgacctgtggatattggctagagtggtgcagcagtggaatgcagtgaacattccgcac
aggcaaatgatggatttgtcggaggccaaaaggaatgctctattcaaagagaaggtgtat
attcaagacaacgacgactacaacggggatactagaaatgcacgtgctgtcgatagacaa
cacgttcttcccctccctaaaacgttcactgaagccagtgaatggggggcgagatcacgt
aaagggtgcagagtctatgcaatgtatcctcacactacggcgttgtactgtgcttctgta
gttgacaatcacacatactgtcgaaaccaggacgatattatcgttgtagagtttgatgga
gacgaagatgaattcggcaacattcctcatcggcacatccctgcacgtttcgttacgatg
atgccacgagagtcgtcttcgtacaagagaaaaagaaaatctatcactgcagtcggaggc
gaatttaaaaggaggccatcctcttcgtctaagcctgttgttcagcgacacgataccatt
gatcaaatgcttttggagatgtacggcgactctgctgccaatgctctcgataagatggac
aatgatcttctcggaggtggattcaacatgacaccccccctcacaccaggggtaaacgag
gcaactgtcaagtctcaaacaagcgacaacaactcgcacgggaaaacgcctcactcg
DBGET
integrated database retrieval system
