Thalassiosira pseudonana: THAPS_25373
Help
Entry
THAPS_25373 CDS
T01078
Name
(RefSeq) predicted protein
KO
K20307
trafficking protein particle complex subunit 10
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPS_25373
Membrane trafficking [BR:
tps04131
]
Endosome - Golgi transport
Tethering complex
TRAPP complex II
THAPS_25373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAPPC10_1st
Ig_TRAPPC10
DKCLD
Motif
Other DBs
NCBI-GeneID:
7442987
NCBI-ProteinID:
XP_002295426
JGI:
25373
UniProt:
B5YLV6
LinkDB
All DBs
Position
18:<433983..438386
Genome browser
AA seq
1454 aa
AA seq
DB search
MSPATLTPVAVPNTPPSGKGLFKNLRGDSGTTTASANWENSNHQPLHLFSKLNTTFTRDY
ASTLHSLSYSNPRTSTPSNPSIGTIAHLPVRLGLTTQPINDPDRWHEGPYCHIYIAACEN
VDHYRAKVRPAIRAFVNQIEGSGIGIKDDSNHGGGVGGGSSNHTSAPPAPPASAVGPSST
STPSTPSKKGGKLTANEKALSKAGMVASKSVDAGNFGRRYIIVFVPTGASSSTNAGGNAA
SGTGGTAGGGGGGGGFGGFRAGRKGGAGVVSPAGGMDINSGHRGHAFSDDASATTATTSS
STNDGASNNNHSAAASAALPPGPIAHSSKEVKELYHKFMKDFPNGRTVILGTLQDGVTGA
TSVAGSGKEQVAAMSPLKNQEWKAFLHNLGGAIVDGFGDRVRRYDEELRRLDGRRAAFVR
KLSGSRSPGDLDDNTTFDLSHFFLVKESLAFSYEQMQLPDEAKLQYEELEAFLPEETWRK
LAQVSGSGAAEKNDEEKGGTSPSDLAMAGDSEGFRHYIKTSGQDLRGVSRLVPQYMYARE
TRLLFQMGSTVDVLARSKDFLLREHRNRLSDVSLEFGRRWKEEMGHVSMNSSSEEVLSKQ
TAMKRERYRREAEVEAWALSSCWDIKCASKHYFSFASASETSQEGGNNSASPAIASTVEE
RDAARFLAEILDFAILRLNRLGDLAIGEEEGKVNPIRKATSERPVDTLQPWEPWRELQQR
RGEIKQKKIESRKNDGSDWSPTLPSGVSTWLRNAFADTSSFEETYLELADAAVLFNRLAG
RFRFASRLEDHRAEVHISRGEYDLAANVLSNNVGACARDQWNRAHYWRIFRLACCQRMSG
DVLAYLETLTQSFNPRLSSVAPKKTSSLFQRDLEAIVTDAAVAEPRWGAFPFLETELSIE
SETAGKTSQLLPFLRRKLTKHLSFVGDELTFTLSINSHLPRSISVNGIRLYLVTFEKYEQ
VYRRNGIVTEDDAFRILSVDAPITIEPGKNQFSFFWQPMTYSTYVLATVEIQWKEASFFY
DSALLRKPMIGVDVQPSEPTQTIELNPLFLIPGHVQNVRLVFQSGSDIITEGVVKLSCSD
GLQVVPPKTDPSKLDDSWSDECIIPLASCEPGKKIVITTLVKSASVKHDDDTDNVQTMRA
IVETLYRQESYSKVLEKGEEPESRPMKTLLEAMVTTLDRPALTVDDAEAFEFGDDHVMVN
ISLQCNSPVPFYIKEWYLDLPLPLQLDEGGDFNEGMFGHAIPEGEMLLLGFRCIRCEDSN
KQFKRPVLRVVLQDDFGKTFLQVLPLNLEDIYKQLRKEDMYAESYNATAELTCSAKEGTV
GHPVPFVYNVDLQSLISPKRKANGHSIASDAGCPILYTILSEGSDWIVSGKVQGLLDLSS
QSETITLQVRGIPTQSGILRNFPELFLEYLPAGKDAKNFVTPPITVQCRNPECFKSMAYT
TSLSLAVPAGVDEF
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgagtccggcgacgttaacacccgtggctgtaccgaatacacctccttcgggtaaagga
ttgtttaagaatctgcgaggagatagcggcacgactactgcatctgccaattgggagaat
agcaatcatcaaccccttcatctattttcaaagctcaacaccaccttcaccagagattat
gcctccactctccactcgttgtcgtattccaatccacgcacgtcaacaccatccaaccca
tccattggcaccatcgctcatctcccggtaagattgggattaacaacgcaaccaatcaat
gatccagatagatggcacgaaggtccctattgtcatatttacattgccgcctgtgaaaac
gtggatcattatcgtgccaaagtacgcccggcgatacgagcgtttgtgaatcagattgaa
gggagtggaattggaatcaaagatgatagcaaccacggtggtggtgtcggtggaggaagt
tcgaatcatacgagtgctccgccggcaccacctgcttcggccgtggggccatcgtcgacg
tctactccttcgacaccgagtaagaagggaggaaagctcacggcgaacgaaaaagcattg
agtaaggctggaatggtagcgagtaaatcggtggacgcggggaactttggtagacggtac
attatagtgtttgttccgactggggcaagcagttccactaatgccggcggcaatgctgct
tcaggaacggggggaactgccggtggtggaggaggaggaggaggatttggtggtttccgt
gctggacggaagggaggggcgggggttgtttctcctgcgggtggaatggatattaattcg
ggacatcgtggtcatgccttttcagatgatgcatctgcaactacggcaacaacttcgtcg
tcgactaatgatggggcatcgaataacaatcatagtgcagctgcttctgcggcgttacct
ccgggtcctattgcacattcgtcaaaggaggtgaaggagttgtaccacaaattcatgaag
gactttccaaatgggagaacggtcattcttggaacattgcaagatggtgtcacgggagct
actagtgttgcgggaagtggtaaagaacaagtggctgcaatgagtccattgaagaatcag
gagtggaaggcatttcttcataacttgggaggtgcgattgtggatgggtttggagataga
gtgagaagatacgatgaagagctgagaaggttggatgggcgaagggcagcatttgtgaga
aagttatcgggtagtagatcgccgggtgatttggacgacaatacaacttttgatctgagt
catttcttcttggtgaaggagagtttggcattctcatatgaacagatgcagttgccagat
gaggccaagctgcagtacgaagagctggaggcgtttctgccggaggagacgtggagaaag
ctagcccaagtatcaggtagcggtgcggcagaaaagaatgacgaagaaaagggtgggacg
tcgccttcagaccttgcaatggccggtgattcagaaggatttcgtcactacatcaaaact
tcaggacaggatcttcgtggtgtttcgagactggttccacagtacatgtatgcccgagaa
acaaggctgttgtttcaaatgggatccactgttgatgtgttggctcgatccaaagatttc
ctcctgagagagcacagaaatcgtctgtcggacgtgtcattagagtttggtagacgttgg
aaagaggagatgggacatgtcagcatgaatagttccagtgaggaagtgttgtcaaaacaa
actgcaatgaaaagagaaaggtatcgaagagaggcggaggttgaagcatgggctctttct
tcgtgttgggatatcaaatgcgcatccaaacactacttctcttttgcatcggcatcggag
acgtcacaggaaggagggaacaacagtgcttctcctgccatagcgtcgacggtagaagaa
cgtgacgctgcacgcttccttgcggaaatacttgatttcgctattcttcgtttgaatcgt
cttggagatttggcaattggtgaagaagaagggaaggtgaaccccatccgaaaagccact
tcagaacgaccagtggatactcttcagccttgggagccgtggagagagttgcaacaacgg
cgtggcgaaatcaagcagaagaaaattgaatctagaaagaatgatggctcagattggtcg
cctacactcccatcgggggtgtcaacatggctcagaaatgcttttgcagatacctcatcg
tttgaagagacttatttggagctagctgatgctgcagttctctttaatcgtctcgctggg
cgttttcgtttcgcctctcggttggaagatcatcgtgcagaagttcacatctcccgtgga
gaatatgatttagctgccaatgtcctttccaacaatgtaggtgcatgtgctcgagatcaa
tggaacagagcgcactattggcgtattttccgattagcatgttgtcaacgcatgtctgga
gatgtgctggcgtatttggagacactgacacaaagcttcaatcctaggctctcctctgtt
gcgccgaagaagacgtcttcgttatttcaacgggatttggaggccattgttacggacgcg
gcagtcgcggagcctcgttggggagcctttccctttcttgagacggaactatcaattgag
tcagagactgctggaaagacatcacaactacttcctttcctgagaagaaagcttaccaaa
cacctcagcttcgttggcgatgagttgacattcacgcttagtatcaacagccatctacct
cggtccatttctgtgaatggcattcgtttgtatctcgttacgtttgaaaagtatgagcaa
gtctaccgcaggaatggaattgtcacggaagatgatgcatttaggattctttcggttgat
gctcccattacaattgaacctggaaagaaccagttctcttttttctggcagcctatgact
tacagtacttatgttctggctactgttgaaatccaatggaaagaagcgtccttcttttac
gacagtgcattgctccgcaaaccaatgattggagtggatgttcagccaagcgagccaacg
caaacaattgagttgaatcctctctttctcatccctggtcacgtccagaacgtccgtttg
gtctttcagtctggctcggatatcattacggaaggcgttgttaaactcagctgctctgat
ggtttacaggtcgtccctccgaaaacagatccgtccaaattggacgattcgtggagtgac
gaatgcatcattcctctcgcttcttgtgagccagggaagaagattgtcattacaacattg
gtcaagagtgcgtccgtgaagcacgatgatgataccgacaatgtgcaaacaatgagagcc
atcgtggagacattgtatcgtcaggaatcatacagtaaagtacttgagaagggcgaagag
ccagaatctagaccaatgaagacacttctcgaggccatggttacaacgttggatcgtcca
gctctcactgttgatgacgctgaagcctttgagtttggagacgatcacgtcatggtcaat
atatcactgcaatgcaactctcctgttccgttctacatcaaagaatggtatctggacttg
cctctacctcttcaacttgacgaaggtggagattttaacgaaggcatgtttggccatgct
attccggagggagagatgctattgctcggtttcagatgtatccgttgtgaggattctaat
aaacaatttaaaaggcctgtactgagggtggtattgcaagacgactttggcaaaacgttt
ctccaggtgcttcctctcaatcttgaagatatttacaaacaactcagaaaggaagacatg
tacgcagaatcatacaacgcaacagcagagttgacgtgctcggcaaaagaaggaactgtg
ggacatccagtgccatttgtatacaatgtcgatttgcaatcgttgatctcgccaaaacgg
aaagctaatgggcactcaattgcatccgacgctggttgcccaatactgtacacaattctt
tcggaaggctcggattggatcgtgagtgggaaggtgcaaggtctgttggatttgtcatcg
cagtcagaaacaatcactcttcaagtccgtggcattccaactcagtcgggcatacttcgt
aacttcccagagctatttctagagtatttgcctgcaggaaaggatgccaagaactttgtt
acaccaccgatcacagtgcagtgtaggaatcctgaatgtttcaagtccatggcatacaca
acctcactgtcgttggctgttcctgcgggtgttgatgagttttag
DBGET
integrated database retrieval system
