Thalassiosira pseudonana: THAPS_269966
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Entry
THAPS_269966 CDS
T01078
Symbol
VTS1
Name
(RefSeq) valyl-tRNA synthetase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
THAPS_269966 (VTS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
tps01007
]
THAPS_269966 (VTS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tps03016
]
THAPS_269966 (VTS1)
Enzymes [BR:
tps01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
THAPS_269966 (VTS1)
Amino acid related enzymes [BR:
tps01007
]
Aminoacyl-tRNA synthetase
Class I (U)
THAPS_269966 (VTS1)
Transfer RNA biogenesis [BR:
tps03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
THAPS_269966 (VTS1)
Prokaryotic type
THAPS_269966 (VTS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
tRNA-synt_1_2
Val_tRNA-synt_C
tRNA-synt_1e
DUF1079
Motif
Other DBs
NCBI-GeneID:
7444826
NCBI-ProteinID:
XP_002295475
JGI:
269966
UniProt:
B5YM58
LinkDB
All DBs
Position
18:697809..701728
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AA seq
989 aa
AA seq
DB search
MADAYHPEAVESAWQDWWEASGFYSCDPSTAIAKPDSEKFVMVIPPPNVTGSLHLGHALT
AAVEDTLTRWHRMKGHATLYIPGTDHAGIATQSVVEKMIMKQSNQTRHDLGREAFISKVW
EWKSEYGNRITTQLRRLGSSVDWSRERFTMDDMCSKAVVEAFNRFHEDGLLYRAERLGNW
SCALKSAISDIEVDYIDLDGRTFLEVKTHKGNKNDAKGRYEFGVLTSFAYPIEDSEEQLV
VATTRLETMLGDTAVAIHPEDPRYTHLHGKCVVHPFNGRKIPIVCDKELVDMSFGTGAVK
ITPAHDPNDYECGKRHNLEFITVLTPDGAINHNGSQFEGMMRYDARIAVEEALKEKGLYK
GKEPNKMRLGLCSRSGDILEPMITPQWYVNCSDMAKRSTDAVRNGELKILPVEHEKTWFQ
WLDNIRDWCVSRQLWWGHQIPAWFATKKGEEGVLKTDMKSNDRWIVARSEEDAYDKAEKL
LGCSRDEIILERDEDVLDTWFSSGLFPFSVLGWPEETDDFKAFYPTSLLETGLDILFFWV
ARMVMMGLQLTDKLPFHTVYLHAMVRDKDGRKMSKSLGNVIDPLEVINGCTLETLLEKLE
GGNLPPKEVARAKKDQEADFPEGIPECGSDALRFGLLAYTVQGRDVNLDMKRVVGYRLFC
NKLWNATRFALQFVSDFQPTANILEELMGSGKMAIRDKFMISRLMACSETVNDCFANYKF
GDSQMAAYSYWMNDVCDVYLELIKPVVYDKSDANKDNRWAAQATLWVAIEAGLRILHPMM
PFVTEELWQRLPGRGTLGNTEPQSIMLAEFPECNKAFRNMEAEESMEITMNIIRACRSLR
QQYNIANKVLTHFFVKVATGQPEDAAKSQTDDIKTLGKASIVDINLDEDAIAKSVGIVVV
DEATTVLMDIKGLVDYNAEIKKLEKQLSKSEGPLQQLEMKMVSPGYDDNVSDEVKASNME
RVDALKKKIADIQEAVANFKNLAELESSS
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcgtatcatcctgaggctgtggagagtgcttggcaggattggtgggaggct
agtgggttctactcctgcgacccctccacagcaatcgccaaaccggactctgaaaagttc
gtcatggtcatcccaccccccaacgttactggatcgttgcatttgggacatgcattgacg
gccgcggtggaggatacgttgacgaggtggcataggatgaagggtcatgctaccttgtat
attcctggaaccgaccacgccggaatcgccacccaatccgtagtcgaaaagatgattatg
aagcaatccaaccaaactcgccacgacctaggccgcgaagccttcatatccaaagtctgg
gaatggaaatccgaatacggcaaccgcatcaccacccaactccgtcgtctcggttccagt
gtcgattggagtcgtgaacgattcaccatggatgacatgtgtagcaaggctgtggtggag
gcgttcaatcgctttcatgaggatggattgttgtatcgtgctgaacgattgggtaattgg
agttgtgctttgaagagtgcaatttcggatattgaggtggattatattgatttggacggg
aggacgtttttggaggtcaagactcataaggggaataagaatgatgccaagggacggtat
gagtttggagtgttgacgtcgtttgcgtacccgattgaagattcggaagaacagttggtt
gtggcgacgactcgtttggagaccatgttgggtgataccgcggtggcgattcatccggag
gatccgaggtacactcatcttcatgggaagtgtgttgttcatcctttcaatgggaggaag
attcctattgtgtgtgataaggagcttgtggacatgtcgtttggtacgggagctgtcaag
attacgccggctcatgatccgaacgattatgaatgtggcaaacgtcacaatcttgagttc
atcaccgttctaacgcccgatggagctatcaaccacaacggatctcaattcgagggcatg
atgcgttacgatgcccgtattgccgtggaggaagcgctcaaggagaagggtctgtacaag
ggaaaagaacccaacaaaatgcgtttgggtctctgttctcgttccggtgacattcttgaa
ccaatgattactccccaatggtatgtcaattgcagtgatatggctaaacgatcgaccgat
gctgtgaggaatggagagttgaagatccttcccgtggaacacgaaaagacgtggttccag
tggttggataatattagggattggtgtgtcagtcgtcagttgtggtgggggcatcagatt
cctgcatggtttgctacgaagaagggagaggagggcgttttgaagacggatatgaagagc
aatgatcgttggattgtcgctcgcagtgaagaagatgcctacgataaggctgaaaagctc
cttggatgctctcgcgatgaaattatcctcgaacgcgacgaagatgtactcgacacttgg
ttctcttctggactcttccccttctccgtcttgggatggccagaggagacggacgatttc
aaggcattctaccccacttctctccttgagactggattggatattcttttcttttgggtt
gcaaggatggttatgatgggattgcagttgacggataagcttcctttccacacggtgtac
cttcatgcaatggtccgtgataaggatggtcgcaaaatgtccaagtctcttggaaatgtg
attgatccgttggaagttatcaacgggtgtactctcgaaacccttctggagaagcttgag
ggtggcaaccttcctccgaaggaagttgctcgggcgaagaaggatcaagaagctgatttc
cccgaaggtattccagaatgtggttcggacgccctccgttttggtcttctcgcgtacacc
gttcaaggaagggatgtcaaccttgatatgaagcgtgtagttgggtaccgtttattctgt
aacaagctgtggaatgcaactcgctttgctcttcagttcgtgtcagactttcaaccgacg
gcgaacattcttgaggagttgatgggtagtggaaagatggctatccgcgacaagttcatg
atttctcgtctcatggcttgcagtgaaaccgtgaacgactgcttcgctaactataagttc
ggtgactctcagatggcggcttattcctactggatgaatgacgtctgtgacgtgtacctt
gagttgatcaagcctgttgtttacgacaagagcgatgccaacaaggacaatcgttgggcg
gctcaggcaacattgtgggtggcaattgaggctggtttgaggattcttcatcctatgatg
ccatttgtgacagaggagttgtggcaaagactgcctggacgtggcacgttgggaaatact
gaacctcagtctatcatgcttgccgagttccctgagtgcaacaaggctttccggaatatg
gaggccgaggagtctatggagattacgatgaacattatccgagcctgccgttcccttcgt
caacagtacaacattgcaaacaaggtccttactcattttttcgtcaaggttgcaactggt
cagcccgaagacgccgcaaagtctcagactgatgacatcaaaactctcggcaaggcgtcc
atcgttgatatcaacctcgatgaagatgccatagcgaagagtgttggtatcgtagtggtg
gatgaagcaacaactgttctcatggatatcaaaggtcttgttgattacaatgcagagatt
aagaagttggagaagcagctttccaagtcagaggggccactacaacaactggaaatgaag
atggtttcaccagggtacgatgacaacgtttcagatgaagtcaaggcatcaaatatggag
agggttgatgcactgaagaagaagattgccgatattcaggaggctgttgcgaattttaag
aacctcgcagaactagagagcagtagttaa
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