Thalassiosira pseudonana: THAPS_35239
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Entry
THAPS_35239 CDS
T01078
Name
(RefSeq) spliceosome associated factor 3b, subunit 3; 130kD spliceosome associated protein
KO
K12830
splicing factor 3B subunit 3
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPS_35239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPS_35239
03041 Spliceosome [BR:
tps03041
]
THAPS_35239
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPS_35239
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
THAPS_35239
Spliceosome [BR:
tps03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
THAPS_35239
Complex B
THAPS_35239
Complex C
U2 SnRNP specific factors
THAPS_35239
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
THAPS_35239
TFTC complex
THAPS_35239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
7450595
NCBI-ProteinID:
XP_002295979
JGI:
35239
UniProt:
B5YNU8
LinkDB
All DBs
Position
7:1781954..1785849
Genome browser
AA seq
1212 aa
AA seq
DB search
ETRSVLRSVSAVRVSGGKRDVVVVGSDSGCLAVIDFGEEGVGRVLHCPVFGKVGCRRDTP
GQYIATDPRGRATMISSIEKRKLVYVLNRDTSGNVTMASPLEAHRPRTVVFDLVGVDNGY
DNPIFASLEVQYEDYEDEDGRNGRGEEDNVPLGKLGDGFTKQLAYYELDLGLNHVSRRWA
TTTHRTACCLAAIPGGADGPSGVLVGGEDYIEYLHEGMASPPIPNGAKVGKFPPKRLICA
IPRRELHPESKGILITHMTVLRQKKGKFFALAQSELGDVYKVTLQMSKEDKTIVQHMTVC
LLDTLPVGTGLNISKLALLFVPAEFGDHGLYQFDAIDIEDSAVNASSGDENAEDAFYSTS
EMAASIAPTFRPTVLRNLHKVYTLDSLAPVISVLVGELAGNEVSPQLYALCGRGPTSSLR
VLRHGLSVTELAVSELPGVPGAVFNVRDDQAAKNGKFYDRYIVVSFADATLVLSVGETVE
EMGKESGFLTTEPTLACSALGNGGNGEQEGGIVQVYPGGVRHIQRGSVSQWHVPGIKKIE
CASANESQILIALVGGELIYFELDPLSGNLMEAATKDVGADVCSLDVGAVPKGKSRSLFA
AVGCRDSTVRLLSLAPGSLLEQKSSTTLGTTRPHSVALSNGVGSDGAGEITLSVGLDDGS
ALRAGVDPITGAMSTSPSRRFLGARPVAVSRVMIEGSPSTLLLSSRPWIGRAGQGRHALA
PMSYAPLDHGCSFSNEAVREGIVATSGSTLRILSVGESGGNDVVLGAEDDEAFNSTRIGL
RYTPRQMCLLSAKVSEASRKIVLAVKAKGDDEAMDMDEDSDEDDTNMDEKKVDGDDDDED
DTTRLTPIRGPVPAVQGRWGSCVRLVDPADGCTTLDCIEMNRNEAALCCASVRFHSRGGE
SLLAVGTVTGMTMNPLRHSSSHVVLYRVVNGERLQLLHRTTVDDGPVLSLVHFQGRLLVG
VGKTVRLYEMGKRQLLKKCELRGMPTMVKTLQAAGDRAFVGDMMQSMQFIRYDSTANRLV
LVAKDRNPRPITCQELLDINTVAVGDKFGNVTILRLPRGADAGAIDVTGTRALWDSARDD
ATPKLETLCTYHVGEVVTSMTRASLVAGGAESLIYVTVTGRVGAFVPFTSRDDVEFYTSL
EGFLRTETPRPTGRDPQSYRSYYAPMKHIVDGDLCDAFAQLPYETKQKIAESLDRSVGEV
MKKLEDTRNALL
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gaaacacgaagtgtcctacgaagtgtgagcgcggtgcgagtgagcggtgggaaacgagat
gtggttgtggtggggagtgattcgggatgtttggctgtgattgattttggggaggagggg
gttggtagggtgttgcattgtccggtgtttggcaaggttggatgtcgtcgagacacccca
ggccaatacatcgccaccgacccccgcggccgcgccacaatgatatcctccatcgaaaaa
cgcaaactagtctacgtcctcaaccgcgatacctcggggaatgtcaccatggcttctcca
ctggaggcacaccgaccgcgaacggtggtgtttgatttggtgggtgtggataatggatat
gataatccgatatttgctagtttggaggtgcagtatgaggattatgaggatgaggatggt
aggaatggaaggggggaggaggataatgtaccgctgggaaaactgggggacggattcacc
aaacaacttgcctattacgaattggatttggggctcaatcacgtctctcgtcggtgggcg
accaccacgcatcgtacggcgtgttgtctcgccgctattccgggaggtgccgacggtcca
tcgggagtactcgtcggaggggaagattacattgaatacctccacgagggtatggcttct
cctcccatccccaacggggcaaaggttggaaaattccctcccaaacgattgatttgtgct
attccacgtagagaactccatcctgaatcgaagggaattctcatcactcacatgacggtg
ttgcgtcaaaagaagggaaagttctttgctttggctcagtctgaattgggggatgtgtac
aaagttacacttcaaatgtccaaggaggataaaacgatagttcaacacatgacggtgtgt
ttgttggatacacttcctgtggggacggggttgaatattagcaagcttgccttgctattt
gttcctgcggagtttggggatcatgggctttatcagtttgatgctattgatatcgaggat
tcggctgtcaatgcatcatcgggggatgagaatgcggaagatgccttttattcaacgtct
gaaatggctgcgtctattgctccgacgtttcgtccgacggtgttgcgtaatcttcacaag
gtgtacacgttggatagtcttgcaccagttatatctgtgcttgtgggagagttggcaggg
aatgaagtcagtcctcagttgtatgcactgtgtggacgaggaccgacgagcagtcttcgt
gtgttgaggcatggattgtcggtcactgagttggcagtgtctgaactaccaggagtgcct
ggggcagtgtttaatgtgagggacgatcaggctgccaagaatggaaagttttatgatcga
tacattgtcgtctcctttgcagatgctactcttgttctttcggtgggtgagacagtagag
gaaatggggaaggaatctggttttctcactacggagcccaccctcgcttgttcagcactc
ggcaacggaggaaacggagaacaggagggaggcatcgtgcaagtctaccccggtggagtt
cgtcacattcaacgcggctcagtttctcagtggcacgttcctggtattaagaagattgaa
tgtgcctctgccaacgagtctcaaatcctcattgcattggttggaggggagttgatttac
tttgagttagatcctctttcggggaatttaatggaagctgccaccaaagatgtaggtgcc
gatgtgtgctcgttggatgtgggtgctgtgccaaaggggaagagtcgcagtttgtttgct
gctgtgggttgtcgtgattctaccgtgagattattgagtttggcaccagggagtttgttg
gaacaaaagagtagcacgacgctgggaacaactagaccgcattccgtggctttatcaaac
ggcgtgggaagcgatggtgccggcgaaatcactttgtcggttggtcttgacgatggatca
gctcttcgtgctggcgtcgatcctattactggcgctatgtccacttctccttcgaggcgt
ttccttggagcacgtcccgtggctgtatctcgggttatgatagagggctcgccgtctaca
ttgctcttgtcgtcaaggccttggattggaagggctgggcaaggacgccatgcgctcgca
cccatgagttatgctcctttggatcatggttgctctttctcaaacgaggctgtcagggaa
ggaatcgttgcaacatcaggaagtacattgaggatattatccgtgggtgaaagtggaggc
aatgatgttgttcttggcgccgaggatgacgaagctttcaattctacacgtattgggctc
agatacactccccgtcaaatgtgcctgctgtcggccaaagtcagtgaagcttcccgtaag
atcgtcttggccgtgaaagcaaagggggatgatgaggcaatggatatggacgaagactct
gacgaggatgataccaacatggacgagaagaaagtggacggagacgacgacgacgaggac
gacaccacgaggcttactcctatccgtggaccagttcctgctgtgcaaggaagatggggg
tcgtgcgtacgtctcgttgatccagccgatggttgcaccactcttgactgtatcgagatg
aataggaacgaggcagcactctgttgtgcctcagttcgctttcactctcgaggaggagaa
tcgttgcttgcagttggaactgttactggcatgacgatgaatcctcttcgccacagttca
agccacgtggttctctatcgtgttgtgaatggtgagcgtcttcagcttttgcataggacc
acggtagacgacggccctgttctttcattggttcatttccaaggcagactgcttgttgga
gttgggaagacagttcgattatacgagatgggaaagagacagttgttgaagaagtgcgag
ctacgaggaatgcccactatggtcaaaacacttcaagctgcgggggacagagcctttgtt
ggggatatgatgcagtctatgcagttcattcggtacgattcaacagccaaccggcttgtc
cttgtagcaaaggaccgcaatccacgcccaatcacttgccaggagcttctcgatatcaac
acagtagctgtgggagacaagtttggcaatgtcaccatattgcgacttcctcgtggtgct
gacgccggtgctattgacgtaactggcactcgtgctctctgggattctgcacgagacgac
gcaacaccaaagcttgaaactctttgcacgtaccacgtgggtgaagtcgttactagcatg
acacgagcttctctcgttgccggaggagcagagtctctcatctacgttactgtgactgga
cgagttggtgcgtttgttccattcacttctcgcgacgatgttgagttttacacttcattg
gaaggctttttgcgaacagagaccccaagacccaccggacgagatccacaatcataccga
tcttactatgctccaatgaagcacatcgttgacggagatctctgcgatgcctttgctcag
ttgccatacgagacgaagcagaagattgcagagagtcttgacaggtctgttggggaggtg
atgaagaagctcgaggatacgaggaatgcacttctttag
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