Thalassiosira pseudonana: THAPS_35499
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Entry
THAPS_35499 CDS
T01078
Name
(RefSeq) smc1
KO
K06636
structural maintenance of chromosome 1
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPS_35499
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
THAPS_35499
Meiosis-specific proteins
Cohesin complex and associated proteins
THAPS_35499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_23
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
7449214
NCBI-ProteinID:
XP_002296149
JGI:
35499
UniProt:
B5YMT5
LinkDB
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Position
7:complement(779912..784288)
Genome browser
AA seq
1241 aa
AA seq
DB search
QSATMPVTYLELENFKSYAGTQRIGPFFNFTCVIGPNGSGKSNLMDAISFILGVQSRDLR
SSQMKDLIFRPPGSERDENLKGGFKKRGRISKKLPQGKTTIFSRVITTKGTGEYQINNTA
VTFKQYEAKLASIGVLLKARNFLVFQGDVESMARKNPKQLVEMFENISGSADLKEEYEKA
LKAKEEAEQRAVFAYNKTKENKAERRVLKDQKEEAEKFHELLEQRTTLKTNYFLWLLFHI
HSDVQQRESALTELEESHQEHQALVAEKEGLLKDAKKDASKARGVTSSKDKLRMKLEGQV
DKLQPGVIESTEAIQALKKRLVADEKAVAKIEKEKANHTDKLAELQAEIDEYLEKESELQ
SEYDELKQSEGRAGSLTEEQEIEYEQIRDAAAVASAAPRRELQTAARALESARAKAAKVA
EERKELMGRKEDAERSVSELTQRRNVLEKSLAKTQAELETAEFDLQAVQKTASEYQTKRD
TLETQLDQINNTLRQAKDDRRKDKEEERILNAIGALMRHFPGVKGRLVDLCRPSQNRYNM
AVTVAGGKDMDAVVVDTKQTAFDCIKYLRDQRIGTATFLPLDSLQIPSPESTERIRAMAE
NDKRYRLAADVIRVNDEYKRAVMYAVGNTLVCDSLDVAREVCFSRRGNSGGSGDDRLKAV
TLGGAVISKAGTMTGGVTKEDSNRAGRFTEQKLDELRNKKEALEVEKADLDSQVGRGSGS
HTAKAEDLRNIIGNLRNKEQYTKSDLEYTKKKLKEQASLLKSSQKVFAKLQAQQQEAEDG
VTIANAQVEQHRQTVRDVEEEHYAPFREKTGISDLRAYDEAIGKAREDFVKQRTNIREHL
AKLTARKNYEDEKDFDDKLSKASKKKAKHESSLEVALESEEKLLRSRCLNVTNSNTNFST
FFRLADAEAELKLAAERELELEEVVREARNVLKEAEDDCSKVTKTMNNEESDLMVLRQKL
HETLQKARVDEVELPMISAEDMDEDEAEGSEDAGKVDFSTMEEDFKLRRSASEEDKLRKK
FESKISKLTAEIEGIMPNMKAAEAYDTMTERVKETVDDFANSKKESQLANEAFNKIRKAR
SHKFNTAFKQIDAALKIIYTDMTKSSKHPLGGNAYLSLDDADQPYLGGMKFNAMPPMKRF
RDMDQLSGGEKTVAALSLLFAIHSFRPAPFFIMDEVDAALDNVNVLKVCNYIRQRSDDFQ
CIVISLKDMFYERSESLVGICRDVSSNSSRTLTLDLTKFDK
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
caatctgcaacgatgcccgtaacctacctcgaactcgagaacttcaaatcctacgcgggc
acacagcgcatcggccccttcttcaatttcacatgcgtaatcggtcccaatggctccgga
aaatccaacctcatggatgccatttccttcattctaggtgtacaatctcgtgatttgagg
agtagccagatgaaggatttgatatttcgtcctccggggagtgagcgggacgagaatttg
aagggggggtttaaaaagaggggacgtatatccaaaaagttgccacagggcaagacaacc
atcttttcacgagtgattactaccaaaggaacgggggagtatcaaatcaacaatactgcg
gtgactttcaagcagtatgaggccaagttggcttcgataggggtgctgttgaaagctagg
aactttttggtgtttcagggggatgtggagagtatggctaggaagaatcccaagcagctc
gtggagatgtttgagaatattagtggatcagccgacctgaaagaagagtacgaaaaggca
ttaaaggccaaggaggaggcagagcaacgtgctgtgtttgcttacaataagaccaaggag
aataaggccgagaggcgtgttttgaaggatcaaaaggaggaagctgaaaagttccatgaa
ctcctagaacaacgcactaccctcaaaaccaactacttcctttggctactcttccacatc
cactctgacgtccagcaacgtgagtctgctctcactgaattggaagagtctcatcaggag
catcaagcactagttgctgagaaagaaggcttgctaaaagatgccaagaaggatgcttcc
aaggccaggggagtgacttcttccaaggacaagctcaggatgaagttggagggacaggtt
gacaagctccaaccaggtgtgattgaatctacagaggcaattcaggcactcaagaagagg
cttgttgcagacgagaaggctgtggccaagattgagaaggaaaaggccaaccacactgac
aaactggcggaacttcaagctgagattgacgaatatctagagaaggaatctgaacttcag
tccgagtatgatgaactcaagcaatccgagggaagagcaggttccttgaccgaggagcaa
gaaattgaatatgagcagattcgtgatgctgctgctgttgccagcgctgctcctcgtcgt
gagcttcagacggcagctagggcattggagagtgctagggcaaaggcggccaaggtggct
gaggagaggaaggagttgatgggcaggaaggaagatgctgagcgcagtgttagtgagttg
actcagcgtaggaacgttctagagaagagcctcgcaaagacgcaagccgaactagaaact
gcagaatttgacttgcaagctgtccaaaagactgcttccgagtaccaaaccaaacgtgat
acccttgaaacccagcttgatcaaatcaacaacactctccgccaagccaaggatgatcgt
cgtaaggacaaggaggaagagcgtattctcaatgccattggtgccctcatgaggcacttc
cctggagtcaagggacgtttggtggacttatgtcgtcccagtcaaaacaggtacaacatg
gctgttactgttgctggaggaaaagatatggatgccgttgtcgtagatacgaaacaaact
gcatttgattgcatcaagtacttgagggaccaacgcattggaactgcaacctttcttccc
ttggactcactccaaattccatctcctgaaagcactgaacgcattcgtgcaatggctgaa
aacgacaaacggtacaggcttgctgctgacgtgatccgtgtcaacgacgagtacaaacgt
gcggtcatgtacgccgttggaaacactcttgtctgcgattcgttggatgtggcacgtgag
gtgtgcttttctcgaaggggcaactctggtggaagtggagatgatcgcttgaaggctgtc
acgttgggtggggctgtcatctccaaggctggtacaatgactggtggagtaacgaaggaa
gactcgaaccgtgctgggagatttacggagcaaaagttggatgagctacgcaacaagaag
gaggcattggaggttgaaaaggccgatttggattctcaggtggggcgtggcagtggcagc
cacactgccaaggcagaggatttgaggaacatcattggcaaccttcgaaacaaggagcag
tacaccaagagtgatttggaatacaccaagaagaaactcaaggaacaagcttcattgttg
aagtcttctcaaaaggtgtttgccaagcttcaagctcaacagcaagaggcagaggacggg
gtcacaattgccaatgctcaggttgaacaacatcgtcaaaccgtccgtgacgtggaagaa
gagcactacgcaccatttcgcgaaaagaccggcatcagtgatttgagagcctacgatgaa
gccatcggcaaggctcgtgaggactttgtcaagcagcgtactaatatccgtgagcatttg
gccaagttgaccgcgaggaagaactacgaggacgaaaaggactttgatgacaagttgtcc
aaggcttccaaaaagaaggctaaacacgagagcagtttggaggtcgctcttgaatccgag
gagaagctattgagatctcgttgcctcaatgttactaactcgaacacaaatttctccaca
ttctttagactcgctgatgccgaggcagagttgaagcttgctgccgagcgtgagttggag
ttggaggaggtagtccgtgaggcacgcaacgtgttgaaggaggcagaggatgattgttcc
aaggttaccaagaccatgaacaacgaggagagtgatctcatggtccttcgtcagaaactc
cacgagactcttcagaaggcaagggtggacgaagtggagttgcccatgatcagtgccgaa
gacatggacgaggacgaagccgagggtagcgaggatgctggtaaggtggacttctcgacc
atggaggaagactttaagttgcgtaggagtgcatcggaagaagacaagcttcgcaagaag
ttcgagtccaagatctccaagcttacggcggagatcgaaggtatcatgcccaacatgaag
gctgccgaagcttatgataccatgacggaacgtgtcaaggagaccgtggacgactttgcc
aactccaagaaggagagtcagcttgccaatgaagcattcaacaagattcgcaaggctcgc
tctcacaagttcaacaccgccttcaagcagattgatgctgctcttaagattatctacacg
gacatgactaagtcaagtaagcatcctcttggtggaaatgcctacctaagtcttgacgac
gctgatcaaccctatctcggcggaatgaagttcaacgcgatgcctcccatgaaacgtttc
cgtgacatggatcagctcagtggtggagaaaagacggtggccgccctctcccttctcttt
gccattcactccttcagacctgctcccttttttatcatggatgaagtcgatgcagcattg
gataacgtgaacgtgctcaaggtgtgcaactacattcgtcagaggagcgatgatttccag
tgcatcgtcatcagtctcaaggacatgttctacgagaggagcgagtctttggttggaatc
tgccgtgatgtatcttccaactcgagccgcacattgactcttgatctcacgaaatttgac
aag
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