KEGG   Thalassiosira pseudonana: THAPS_38143
Entry
THAPS_38143       CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K14791  periodic tryptophan protein 1
Organism
tps  Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:tps00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tps03009]
    THAPS_38143
Ribosome biogenesis [BR:tps03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    THAPS_38143
  Pre-60S particles
   Other pre-60S particles
    THAPS_38143
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_RFWD3 EIF3I Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd MIOS_WD40 Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_EML Beta-prop_WDR35_TULP_N WD_LRWD1 Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_SCAP
Other DBs
NCBI-GeneID: 7444834
NCBI-ProteinID: XP_002295646
JGI: 38143
UniProt: B5YM77
LinkDB
Position
18:complement(750396..751656)
AA seq 375 aa
MNNELDDDEDDDEDDEDYLEDVRIREGDALVVVAKTEEDFASLEINIFDTQSSNLYVHHD
IPLPSFPLCLALGNVVSSYQPNSNKNSITSGNYCAVGSFETGIEIWNLDVMNALEPTIVL
GGMDTKGGGKKKKKKGSTQSNNTGLREGSHTDAVMGLSWNTVHQQVLASGSADGTVKLWD
VTHTTRGKGGDYVRPSATLTHHSDKVQSLAWHPSEGTLLATGGYDRKVCLVDARSAAAEA
TANSSSVKKAKLLADCEAIAWDVHNQQYLTAASEDGVVQCWDVRKFGGEPVWSMIAHEYG
GVSDIAYNPLVPGMLITCSIDKTVALWDTQNASPSPHPCGSKDMSVGRLHSVSIYPSSPW
LMACGGSGNELAIWD
NT seq 1125 nt   +upstreamnt  +downstreamnt
atgaacaatgagttggacgatgacgaagacgacgatgaagacgacgaagactacttggaa
gatgtgagaattagagagggagacgcactggtggttgttgccaagacggaagaagacttt
gcctccctcgaaatcaacatctttgacacccaatcctctaacctctacgtccatcatgac
attccactcccttcctttcctctttgccttgcgcttggcaatgtcgtttcgtcctatcaa
cccaactccaacaaaaacagtatcacctctggaaactactgtgctgtgggctccttcgaa
actggcattgagatatggaacttggatgtcatgaatgcattggaaccgacgatcgttttg
ggtgggatggatacaaagggtggtgggaagaagaagaagaaaaagggatccactcaatca
aacaatactggactacgagagggaagtcacaccgatgcagtcatggggttgagttggaat
acggttcatcaacaagtactcgcgagtggttcagcggatggcactgtcaaactatgggat
gtaacacatactaccagggggaagggaggtgattatgtcagaccatcggcaacgctaact
catcattccgataaagtacaatctttggcatggcatccatcggagggaacactcctcgct
acaggtggatacgatcgtaaggtttgtctcgttgatgctcgatccgcagctgccgaggct
accgccaactccagcagtgtcaagaaggcaaagttgctggcagattgtgaggccatcgca
tgggatgtgcataaccaacagtacttgactgcggcgagtgaggatggtgtggtgcagtgt
tgggatgttaggaagtttggaggagagcctgtttggagtatgattgctcacgagtatggt
ggtgttagcgatattgcttacaatccactcgtacccggaatgcttataacctgctccatc
gacaaaacggtagctctgtgggatacacaaaatgcttccccctcccctcatccctgtgga
tccaaagatatgagcgtaggtagactccactctgtatcaatctacccctcctcaccatgg
ctaatggcatgtggaggaagtgggaacgagttggcgatttgggat

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