Thalassiosira pseudonana: THAPS_38143
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Entry
THAPS_38143 CDS
T01078
Name
(RefSeq) predicted protein
KO
K14791
periodic tryptophan protein 1
Organism
tps
Thalassiosira pseudonana
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPS_38143
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
90S particles
Other 90S particles
THAPS_38143
Pre-60S particles
Other pre-60S particles
THAPS_38143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_RFWD3
EIF3I
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
MIOS_WD40
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR35_TULP_N
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
7444834
NCBI-ProteinID:
XP_002295646
JGI:
38143
UniProt:
B5YM77
LinkDB
All DBs
Position
18:complement(750396..751656)
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AA seq
375 aa
AA seq
DB search
MNNELDDDEDDDEDDEDYLEDVRIREGDALVVVAKTEEDFASLEINIFDTQSSNLYVHHD
IPLPSFPLCLALGNVVSSYQPNSNKNSITSGNYCAVGSFETGIEIWNLDVMNALEPTIVL
GGMDTKGGGKKKKKKGSTQSNNTGLREGSHTDAVMGLSWNTVHQQVLASGSADGTVKLWD
VTHTTRGKGGDYVRPSATLTHHSDKVQSLAWHPSEGTLLATGGYDRKVCLVDARSAAAEA
TANSSSVKKAKLLADCEAIAWDVHNQQYLTAASEDGVVQCWDVRKFGGEPVWSMIAHEYG
GVSDIAYNPLVPGMLITCSIDKTVALWDTQNASPSPHPCGSKDMSVGRLHSVSIYPSSPW
LMACGGSGNELAIWD
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgagttggacgatgacgaagacgacgatgaagacgacgaagactacttggaa
gatgtgagaattagagagggagacgcactggtggttgttgccaagacggaagaagacttt
gcctccctcgaaatcaacatctttgacacccaatcctctaacctctacgtccatcatgac
attccactcccttcctttcctctttgccttgcgcttggcaatgtcgtttcgtcctatcaa
cccaactccaacaaaaacagtatcacctctggaaactactgtgctgtgggctccttcgaa
actggcattgagatatggaacttggatgtcatgaatgcattggaaccgacgatcgttttg
ggtgggatggatacaaagggtggtgggaagaagaagaagaaaaagggatccactcaatca
aacaatactggactacgagagggaagtcacaccgatgcagtcatggggttgagttggaat
acggttcatcaacaagtactcgcgagtggttcagcggatggcactgtcaaactatgggat
gtaacacatactaccagggggaagggaggtgattatgtcagaccatcggcaacgctaact
catcattccgataaagtacaatctttggcatggcatccatcggagggaacactcctcgct
acaggtggatacgatcgtaaggtttgtctcgttgatgctcgatccgcagctgccgaggct
accgccaactccagcagtgtcaagaaggcaaagttgctggcagattgtgaggccatcgca
tgggatgtgcataaccaacagtacttgactgcggcgagtgaggatggtgtggtgcagtgt
tgggatgttaggaagtttggaggagagcctgtttggagtatgattgctcacgagtatggt
ggtgttagcgatattgcttacaatccactcgtacccggaatgcttataacctgctccatc
gacaaaacggtagctctgtgggatacacaaaatgcttccccctcccctcatccctgtgga
tccaaagatatgagcgtaggtagactccactctgtatcaatctacccctcctcaccatgg
ctaatggcatgtggaggaagtgggaacgagttggcgatttgggat
DBGET
integrated database retrieval system