KEGG   Thalassiosira pseudonana: THAPS_7311
Entry
THAPS_7311        CDS       T01078                                 
Name
(RefSeq) human U6 snRNA-associated protein LSm8-like protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
tps  Thalassiosira pseudonana
Pathway
tps03018  RNA degradation
tps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    THAPS_7311
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THAPS_7311
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tps03019]
    THAPS_7311
   03041 Spliceosome [BR:tps03041]
    THAPS_7311
Messenger RNA biogenesis [BR:tps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     THAPS_7311
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     THAPS_7311
Spliceosome [BR:tps03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    THAPS_7311
SSDB
Motif
Pfam: LSM Gemin6
Other DBs
NCBI-GeneID: 7450613
NCBI-ProteinID: XP_002296349
JGI: 7311
UniProt: B5YNY4
LinkDB
Position
7:complement(<1876544..>1876864)
AA seq 106 aa
MASTLSDWTNKPVTILTCDGRLITGILLGYDQLQNLILQKSYESVYSSDSPVEKVELGLF
VVRGDNVAVVGDGNSTVDVEGEEEGNSGEDDTVRAEPIQPIVQNVT
NT seq 321 nt   +upstreamnt  +downstreamnt
atggcatccactctctccgactggaccaacaaaccagtcaccatcttaacctgcgacgga
cgcctcatcaccggcatcctcctcggatacgaccagcttcaaaacctcattcttcaaaag
tcatacgagtcggtgtacagttcggacagtccggtggagaaggtggagctgggcttgttt
gtggtgaggggtgacaatgtggcggtggtcggtgatgggaatagtaccgtggatgtagag
ggagaagaggagggtaacagtggggaggatgatactgtgagggctgaaccgattcaaccg
attgtgcagaatgtcacgtag

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