Tunturiibacter psychrotolerans: RBB77_04210
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Entry
RBB77_04210 CDS
T10213
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tpsc Tunturiibacter psychrotolerans
Pathway
tpsc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tpsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RBB77_04210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpsc03400
]
RBB77_04210
Enzymes [BR:
tpsc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RBB77_04210
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RBB77_04210
DNA repair and recombination proteins [BR:
tpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RBB77_04210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF1612
Motif
Other DBs
NCBI-ProteinID:
XCB34105
UniProt:
A0AAU7ZTB4
LinkDB
All DBs
Position
complement(1070558..1071391)
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AA seq
277 aa
AA seq
DB search
MPELPEVETVANGVHARIHGQTIRSVWTSNKPQTFKSSPDDIVETLTGSRIDRVHRVGKT
IVVDLTRSKEQGKKAAQFLVHLGMTGRLLVSTPDTPIPSHTHAILTLSSGKELRFVDARR
FGRLSVMEAVTPEQKYAGPGAEPLTIALEDFIALFHGRKTPIKAALLNQSLLHGVGNIYA
DESLFHAGIRPTRHAGRLTRAELTRLHAALIKVLAEAIKLGGSSVSDYVDADGVAGFFQL
HHHVYSRTGQPCRICGTPIKRVVVGGRSTHYCTTCQK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcccgaagtcgaaaccgttgccaatggcgtccacgcccgcattcacggt
caaaccatccgctccgtctggaccagcaacaaacctcagaccttcaagtcctcccccgac
gacatcgtcgaaactctcaccggcagccgcatagaccgcgtccaccgcgtcggaaaaacg
atcgttgtcgatctgacgcgatcgaaagaacaagggaagaaggccgcacaattcctcgtc
caccttggcatgaccggccgtctgctggtttcaacgcccgacactccgatcccatcgcac
actcacgccatcctgactctaagcagtggaaaggaacttcgcttcgtcgatgctcgccgc
ttcggccgcctgtctgtgatggaagcagttacgccagagcagaaatatgccggccccggc
gccgaacctctcaccatagcgcttgaagatttcatcgcgctcttccatggccgcaaaacc
cccatcaaagccgcgctattgaatcagtctctgctccacggcgtagggaacatctatgcc
gacgaaagtctcttccacgctggcattcgccccacacgccacgcaggacgcctcacccgg
gccgaactgactcgcctccacgcagcgttgatcaaggtgctcgctgaagcgatcaagctg
ggcggctcgtcggtctccgactacgtagacgcagacggagtcgcaggcttcttccaattg
caccaccacgtctactcgcgcacaggccagccttgccgcatctgcggcacaccgatcaaa
cgcgtcgtagtcggcggccgcagcacccactactgcaccacctgccagaaatag
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