Tunturiibacter psychrotolerans: RBB77_13725
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Entry
RBB77_13725 CDS
T10213
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tpsc Tunturiibacter psychrotolerans
Pathway
tpsc03030
DNA replication
tpsc03430
Mismatch repair
tpsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBB77_13725 (dnaE)
03430 Mismatch repair
RBB77_13725 (dnaE)
03440 Homologous recombination
RBB77_13725 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpsc03032
]
RBB77_13725 (dnaE)
03400 DNA repair and recombination proteins [BR:
tpsc03400
]
RBB77_13725 (dnaE)
Enzymes [BR:
tpsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBB77_13725 (dnaE)
DNA replication proteins [BR:
tpsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RBB77_13725 (dnaE)
DNA repair and recombination proteins [BR:
tpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RBB77_13725 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
RE_TaqI
Motif
Other DBs
NCBI-ProteinID:
XCB31511
UniProt:
A0AAU7ZL55
LinkDB
All DBs
Position
3370641..3374177
Genome browser
AA seq
1178 aa
AA seq
DB search
MAAEFTHLHLHTDYSLLDGACDVDKLAAHLSKIGQTAAAMTDHGNIFGAVHFFDAMQKKG
IKPILGCELYICKNDDHRAAPEGDKYNHLLVLAENQEGYRNLVRLTSEAALHGFYRKPRV
SKDFLARHSEGLIGFSGCLAGEVNQFLMDDKYDEAKRTAGFYQDLFGKGNYFLEIQDHGL
APDKAVCDALFKMERELDIPLIATNDSHYVAADDSRAHEILLCVQTAGSMNDPKRFKFDT
QEFYIKSAEEMLRTFSQNPEVCTRTMQFIERCNVKMVKVDNPFPDFVVPEGETLDSYFEQ
VCRKGLEMRLETAVAHLRDRGLLKKTIPEYHARLDRELNIIKQMKFSGYFMIVWDFIKYA
REQNIPVGPGRGSAAGSLVAYVMQITDIDPLQNELLFERFLNPERVSMPDIDIDFCMNRR
GEVIEYVNRKYGRDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIPPTIGITI
DQALKDSPTLAGAYEGDPKIKELIDAALRLEGLVRGAGVHAAGVVIAPKPLTELVPVTRA
KNDDIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDALKLIKSTTGKDVDMSTVPLDDVTT
YEQIYHRALTSGVFQFESGGMRDVLRRYKPNTVEDLTALNALYRPGPIQGGMIDDFIERK
WGRRPVSYELPELETILKETLGVIVYQEQVMQISNVLAGYSLGDSDLLRRAMGKKDPAEM
AKQRDRFMSGAAANKHPKDTAGKIFDLMAQFAGYGFNKSHSAAYALLAYHTAWLKTHYPV
EFMAALLTSETSKPENVVKYISECREMNISVVPPNVQVSDANFTPINGAIGFGLAAIKNV
GHNAIESIIAARTALQAAGKKGFSSLWEFCEKVDLRLLNKRVLESLIKAGAMDAFGGRAA
LCAALDKAMERAQKSQRDEAAGQHGLFGIFDADLHPSSSNNGEDALPSVAEWDEHTRLQN
EKEVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQVFRRGRSEEPQNEISIAGVI
TGLKVAKSKRSGEMYAQASLEDTVGKIELIAFPQSYEKLAEKLKIDVPVVIRGVLRGEED
SAPKLAISSIQALEDVKIKLPDSLRIKVPLHNPDVALLEKLHAILVGAPGKGKLLLDLEE
PGEFCAVLEPHNCLVAADRLFIDKVEELVGRGGVRIID
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagttcacccaccttcatcttcatactgattactcccttctcgatggcgcg
tgtgacgtagataaactcgccgcgcatttgagcaaaattggccagaccgcagctgcgatg
accgaccatggaaatatctttggcgcggtgcacttctttgacgcaatgcagaagaaggga
atcaagccgattctcgggtgtgaactttatatctgcaagaacgatgatcatcgcgctgca
cctgagggcgacaagtataaccacttgcttgtgctggcggaaaaccaggaaggctatcgc
aatctggttcgattgacgagcgaggcggcactccatgggttctatcggaagccgcgggtg
tccaaggatttccttgctcggcactccgaggggctgatcggtttctctggctgtcttgcg
ggtgaagtgaaccaattcctgatggatgacaagtacgatgaggcgaaacgtacggccggt
ttctatcaggacctttttgggaaggggaattactttctcgagattcaggatcacgggctg
gcgccggacaaggctgtttgcgatgcgttgttcaagatggaacgggagcttgatattccg
ctgatcgcgaccaacgacagccactatgttgctgctgatgattcacgtgcacatgagatt
ctgctctgcgttcagaccgcgggcagcatgaatgacccgaagcgcttcaagttcgacacg
caggagttttacatcaagagtgcggaggagatgctgcgcaccttctcacaaaacccagag
gtttgcacgcgaacgatgcagtttatcgagcgctgcaacgtgaagatggtgaaggtcgat
aatccgtttccggactttgtggtgcccgaaggtgagacgctggacagctatttcgagcag
gtgtgccggaagggtttggagatgcggcttgaaacggcagtggcgcatcttcgtgaccgg
ggtctcctgaagaagacgattccggagtaccacgcgcgattggatcgcgaactaaacatc
atcaaacagatgaagttttccggctatttcatgattgtttgggactttatcaaatatgca
cgcgagcaaaatattcctgtagggcctggccgtggatcggctgcgggctcgctggttgct
tatgtgatgcagattacggatatagacccactgcagaacgaacttctgtttgagcgtttt
ttgaatccggaacgtgtatcgatgccggatatcgatattgacttctgtatgaaccggcgc
ggcgaagtgattgagtacgtcaatcggaagtacggtcgtgatcaggttgcgcagatcatc
acgttcaacacaatggcggcgaaggcggcgatcaaggacgttggacgggccctggatatg
ccgtatggtgaagtcgaccggattgcgaagatgataccgcctacgatcggcatcacgatt
gatcaggctctgaaggattcgcccacgctggcgggcgcgtatgaaggcgatccgaagatt
aaagagttgatcgatgccgcgctgcgactggaagggctggtgcgtggtgcgggcgtgcat
gctgcgggtgtggtgattgcgccgaagccgctgacggagctggttccggtgacgcgggca
aagaacgacgatatcgttacagcgtatgacatgaaggccgtcgagaagatgggacttctc
aagatggacttcctcggattgacgacgctgacggtgatcgacgatgcgctgaagctgatc
aaatcgacgaccggcaaggatgtcgacatgtcgacagtgccgcttgacgatgtgacgacc
tatgagcagatctatcaccgcgcactgacgtcgggcgtttttcagtttgagtcgggtggg
atgcgagatgtgctgcggcggtataagccgaacacggtggaggatctgacggcgttgaat
gcgctctatcgcccggggcctattcaaggtggcatgatcgatgacttcatcgaacgtaag
tggggccggcggcctgtgagctacgagttgcccgagcttgagacgattctgaaggagacg
cttggggtcatcgtgtaccaggagcaggtcatgcagatctcgaatgtgctggcgggttat
tcgcttggcgattcggatttgttgcggcgtgcgatggggaagaaagatcctgcggagatg
gcaaagcagcgcgaccggtttatgagcggcgcggcagcgaataagcatccgaaggatacc
gctgggaagatcttcgacctaatggcgcagttcgccggatatggattcaacaaatcgcac
tcagcagcttacgcgctgctggcataccacaccgcctggttgaagacgcattacccggtg
gagtttatggcggcgctgctgacgagcgaaacgtcaaagccggagaatgtcgtgaagtac
atctcggagtgccgcgagatgaacatctcagtggtgcccccgaatgtgcaggtttcggat
gcgaactttacgccgatcaatggggcgatcgggtttgggcttgcggcgatcaagaacgtg
gggcataacgcaattgagtcaatcattgcggctcgtacggcactgcaggcagcagggaag
aagggcttctcgagcctgtgggagttctgcgagaaggttgatctgcggttgctgaataaa
cgggtactcgagtcactgatcaaagctggcgcgatggatgcgtttggcggccgggctgca
ttgtgcgctgctctcgataaagcgatggagagggcacagaagtcgcagagagatgaggcg
gctggtcagcatggattgtttggaatcttcgacgctgacctgcatccgtcttcctcgaat
aacggggaagacgcgctgccgagcgtggcggagtgggatgaacatactcgtttgcagaat
gaaaaagaggtgttgggattctttgtctcgggacacccgatggataaataccgggagaag
ttacggaacatgaaggtggtcgatacagcaacggcttgtgagatgaaacctgagccacag
gtgtttcgccgtggacgtagtgaggaaccacagaacgagatttctatcgcaggcgtcatt
acgggcctgaaggtggcaaagtccaagcgctccggtgagatgtatgcgcaggcttcactc
gaggatacggtcgggaagatcgagttgatcgcatttcctcagtcgtacgagaagttggcg
gagaagctgaagatcgatgtgccggtagttatccggggcgtgctgcgcggggaagaagat
tctgcgccgaaattggccatttctagcattcaggcgctggaggacgtaaagatcaagctg
ccggattcgttgcggatcaaggtgccactgcacaatccggacgtggcgctgctggagaaa
ttgcatgccatcctggttggtgctccgggtaaggggaagcttctgcttgatcttgaggag
ccaggggagttttgcgcggtgcttgagcctcacaactgcctggttgccgcagatcgactt
tttatagataaggttgaggaactagttggccgcggaggggttcggatcatcgactag
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