Tunturiibacter psychrotolerans: RBB77_19175
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Entry
RBB77_19175 CDS
T10213
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpsc Tunturiibacter psychrotolerans
Pathway
tpsc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpsc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBB77_19175 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpsc03021
]
RBB77_19175 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpsc03400
]
RBB77_19175 (rpoC)
Enzymes [BR:
tpsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBB77_19175 (rpoC)
Transcription machinery [BR:
tpsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBB77_19175 (rpoC)
DNA repair and recombination proteins [BR:
tpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBB77_19175 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
DUF7489
Motif
Other DBs
NCBI-ProteinID:
XCB32541
UniProt:
A0AAU7ZNM9
LinkDB
All DBs
Position
complement(4628892..4633082)
Genome browser
AA seq
1396 aa
AA seq
DB search
MFRSSPFELTGPIADFDAIKIQLASPEKIRSWSHGEVTKPETINYRTFKPERDGLFCARI
FGPITDWECLCGKYKRMKHRGVICDKCGVEVTLSKVRRERLGHIELASPCSHVWFFKGLP
SRIGHLLDISLRELEAVLYFESYVVVDPGDAPVKEREVIKDETKFRELDQQYRPSGFKAM
MGAEAIKELLKRVEVNELSIELRERMKSETSLQKKLKYSKRLKIVEAFRKSDNLPQWMIL
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLMDLHAPEVIVRNEKRML
QEAVDALFDNGRRGRVLRGANNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYHRLEQTGHCTTIKQAKEMVEMQEPIVWDILEEVIKDH
PVLLNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSPEAQIE
ASVLMLASHNILSPASGQPITVPTQDLVLGLYYLTKAKVNAKGEGRVFANIEEVFMALEA
KQVETLTPIRLRYTGPVLDMTTAYDDQDLTHTEPVEFNKQYINTTVGRAILNDALPEGMP
YVNGLLKKKGIGQLINYCYLNLGLEVTVKTLDRVKDLGFTYATRSGLSVGLDDMVIPDSK
YTVVGDAEKQVLAMQQQYLDGAITNGERSNKVIQMWSGVTERVADEMFNNMKRADKEGAM
NPIYIMADSGARGSKQQIRQLSGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGA
RKGLADTALKTADSGYLTRRLVDVAQDVIISHNDCGTVEGIYVTPIIEAGETIEPLRDRI
IGRVSLEKLKDFEGKTIVDINQEIDEDLANAIQAAGIERVKIRSVLTCESKRGVCILCYG
RNLGSGKMVEMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRVSDASHLEAKNVGTVRF
INLVTVRSKDGGLVAFNRNGSLAIVDDKGREKERYAVVYGAKLKVEEGQQVAQGDRLGEW
DPYTFSLLTEIAGTVQFKDLQEGVTLNEEVDEVTGLSRLVVADSSDEKRQPAIIIKSAHG
NKRYLMPSRAHLMVADGDEIFPGDILAKIPRETTRTKDITGGLPRVVELFEARKPRDPAI
ISKIDGVVRFGEVSKGQRKVYVTADNGQEEEYSVPRGTYVNVQEGERLRAGDALIDGPRN
PHDILEVLGERALQQYLVNEIQEVYRLQGVTISDKHIETIVRQMLRWVKIEEVGDTSFLV
DQQTDRFRFNAENQRVLMSGGKPAIGRSLLLGITKASLSTDSFISAASFQETTRVLTEAS
INGSIDTLRGLKENVIVGRLIPAGTGMEYYRNVQLSPELEEAAAQVQQEVASAIEAEERE
LEQMRMEGEQEELAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgctccagcccatttgaactgaccggacccatcgccgacttcgacgccatcaag
atccagctcgccagccccgagaagatccgcagctggtcgcacggcgaggtcaccaagcca
gaaaccatcaactaccgcaccttcaagcccgagcgcgacggcctattctgcgcacgcatc
ttcggacccatcaccgactgggagtgcctctgcggcaagtacaagcgcatgaagcaccgc
ggcgtcatctgcgacaaatgcggcgtcgaagtcaccctctcgaaggttcgccgcgaacgc
ctcggccacatcgagctcgccagcccctgctcgcacgtctggttcttcaagggcctgccc
tcgcgtatcggccacctgctcgacatcagcctgcgtgagctcgaagctgttctctacttc
gagtcctacgtcgtggtcgatccaggcgacgcgcccgtcaaggagcgcgaagttatcaag
gacgagaccaagttccgcgaactcgatcagcagtaccgcccctccggcttcaaggccatg
atgggcgccgaggccatcaaggaactcctcaagcgcgtcgaagtcaacgagctctccatc
gagctgcgcgagcgcatgaagtccgaaacctcgctgcagaagaagctcaagtactccaag
cgcctcaagatcgtcgaggccttccgcaagtccgacaacctgccccagtggatgatcctc
gacgtgatccccgtgatcccgccagagctgcgtcctctcgttccgctcgacggcggccgt
ttcgccacgtccgacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggctc
aagaagctgatggacctccacgctcctgaggtcatcgtccgcaacgagaagcgcatgctg
caggaggccgtcgacgctctgttcgacaacggccgccgtggccgcgtcctccgcggtgcg
aacaaccgtccgctgaagtcgctctccgacaccctcaagggcaagcagggtcgcttccgt
cagaaccttctcggtaagcgcgtcgactactccggtcgttcggtcatcgtcgtcggtccc
gagctgaagctgcatcagtgcggtcttcccaagaagatggcgctcgagctcttcaagccc
ttcatctatcaccgcctcgagcagaccggtcactgcaccaccatcaagcaggccaaagag
atggtcgaaatgcaggaacccatcgtctgggacatcctcgaagaggtcatcaaggatcac
ccggttcttctgaaccgcgccccgacgcttcaccgtctcggcatccaggccttcgagccc
gtgctcgttgaaggtaaggcgatcaagatccatccgctcgtctgcaccgccttcaacgcg
gacttcgacggcgaccagatggccgttcacatcccgctctcgcctgaggcccaaatcgaa
gccagcgtactcatgctcgcttcgcacaacatcctctcgcccgccagcggtcagcccatc
accgttccgacgcaggacctcgtcctcggcctctactacctcaccaaggcgaaggttaac
gccaagggtgaaggccgcgtcttcgccaacatcgaagaggtcttcatggctctcgaagcg
aagcaggtcgagaccctcaccccgatccgtctgcgctacaccggccctgtcctcgacatg
accaccgcgtacgacgatcaggacctcacccacaccgagccggtcgagttcaacaagcag
tacatcaacacgaccgtcggccgcgccatcctcaacgatgcgcttcccgagggcatgcct
tacgtcaacggcctgctcaagaagaagggcatcggtcagctcatcaactactgctacctg
aacctcggcctcgaagtcaccgtcaagactctcgaccgcgtcaaggatctgggcttcacc
tatgccacgcgctccggcctttcggtcggtctcgacgacatggtcatccccgactccaag
tacaccgtcgtgggcgatgccgaaaagcaggttctcgccatgcagcagcagtacctcgac
ggagccatcaccaacggtgagcgctccaacaaggtcatccagatgtggtcgggagttacc
gagcgcgtcgccgatgagatgttcaacaacatgaagcgtgccgacaaggaaggagccatg
aacccgatttacatcatggccgactccggtgctcgtggatccaaacagcagatccgtcag
ctctccggcatgcgtggtttgatggccaagccctccggcgaaatcatcgaaacccccatc
acggcgaacttccgcgaaggtctcaccgtgctgcagtacttcatctcaacgcacggcgca
cgtaagggcctcgccgataccgcactcaagaccgccgactcgggttatctcacccgccgt
ctggtcgacgttgcgcaggatgtcatcatctcgcacaacgactgcggcactgtcgaaggc
atctacgtcacccccatcatcgaagccggcgagaccatcgagcccctgcgcgaccgcatc
atcggccgcgtctcgctcgagaagctcaaggacttcgagggcaagaccatcgtcgacatc
aaccaggagatcgacgaagatctcgccaacgccattcaggccgcgggtatcgagcgcgtc
aagattcgctcggttctcacctgcgaatccaagcgtggcgtctgcatcctctgctacggc
cgtaacctcggctccggcaagatggttgagatgggcgaagccgtcggcgtcatcgcggcg
cagtccatcggcgagcccggtactcagctcaccatgcgtaccttccacatcggcggtacg
gcatcacgcgtatccgacgcttcgcacctcgaagccaagaacgtcggtaccgtacgcttt
atcaacctcgtcaccgttcgctccaaggacggcggcctggttgccttcaaccgcaacggt
tctcttgccatcgtcgatgacaagggccgcgagaaggagcgttacgctgtcgtctacggt
gccaagctcaaggtcgaagagggccagcaggtagcgcagggcgatcgcctcggcgagtgg
gatccgtacaccttctcgctcctcaccgagatcgctggaaccgtccagttcaaggacctc
caggaaggcgtcaccctcaacgaagaagtcgacgaagtcaccggcctcagccgcctggtc
gttgccgactcctccgatgagaagcgtcagcccgcgatcatcatcaagtccgctcacggc
aacaagcgttacctcatgccttcacgcgctcacctcatggtggccgacggcgacgagatc
ttccccggcgacatccttgccaagatcccacgcgaaacaacgcgtaccaaggacatcacc
ggcggtctcccacgcgtcgtcgaactcttcgaggctcgcaagccgcgcgacccggcaatc
atcagcaagatcgatggtgtcgttcgcttcggtgaagtctcgaagggtcagcgcaaggtc
tacgtcactgcggacaacggtcaggaagaggagtacagcgttccccgcggtacgtacgtc
aacgtgcaggaaggcgaacgcctccgtgccggtgatgcgctcatcgacggtcctcgcaac
ccgcacgacattctggaagttctcggcgagcgcgcattgcagcagtacctcgtcaacgaa
atccaggaagtctaccggctccagggcgttaccatctccgacaagcacatcgaaaccatc
gttcgtcagatgcttcgctgggtcaagatcgaagaagtcggtgacaccagcttcctcgtc
gatcagcagaccgaccgcttccgcttcaacgccgagaaccagcgcgtgttgatgtccggc
ggcaagcctgccatcggccgttcgctcctgctcggcatcaccaaggcgtcgctctcgacc
gacagcttcatctcggccgccagcttccaggagaccacccgcgtactcactgaagccagc
atcaacggctccatcgacacgctccgtggcctcaaggaaaacgtcatcgtaggccgcctc
atccccgccggcaccggcatggagtactaccgcaacgtccagctctcacccgagctagag
gaagcggcagcccaggtccagcaggaagtggcatccgccatcgaagccgaagagcgcgag
ctagagcagatgcgcatggaaggcgaacaagaagaactagccgccgagtag
DBGET
integrated database retrieval system
