Tunturiibacter psychrotolerans: RBB77_22560
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Entry
RBB77_22560 CDS
T10213
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tpsc Tunturiibacter psychrotolerans
Pathway
tpsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBB77_22560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpsc03019
]
RBB77_22560
Enzymes [BR:
tpsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBB77_22560
Messenger RNA biogenesis [BR:
tpsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBB77_22560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
XCB33166
UniProt:
A0AAU7ZQE0
LinkDB
All DBs
Position
complement(5453296..5454819)
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AA seq
507 aa
AA seq
DB search
MTSATLEQNDQISQNQQNPSPQANTAAANPAGLSLVEDVRFTDFNISDSLKNRLTSAGFT
MPTPVQAKAIPPALEGSDILATASTGTGKTLSFLIPMIQRMDANSVPSTKGKRGPIRALI
LLPTRELAMQVLEAYWKLVPGSKSDAVLVCGGLSENNQLDQLDRGPRLVVATPGRLEDFL
RRREININAVEMLVLDEVDRMLDMGFLPAIRRIVGALPKTRQTMCYSATLDANIREIVRD
YVKEPVRIEIGQTSKPSDRVELRVYTVMQDQKLGLLDQMLRQEEGTFLVFSRTKHGADRI
SKKLEKLGHDSDVIHGDRSQSQRTAALKGFANGRHRVLVATDVAARGIDVNDIAHVVNYD
LPNASDDFVHRIGRTGRAGKKGVATTFVMPQERHDARKLERELKIKFEWREADKNLEKEV
RNAPLDTTAQGQDLMQLETRSWKGNDPVTPMTTPNANYGAKKSGFRSRNGGGGFSGGRSS
GGRGPGGRPNSNSRPGSSRSGPARRGQ
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttgacctcagcaacgttagaacagaacgaccagatctctcagaaccagcagaacccgagt
cctcaagccaacacagccgccgcgaatcccgcaggcctttccctagttgaggatgttcgc
ttcaccgacttcaacatctcggactccctcaagaaccgcctcaccagcgccggcttcacg
atgccgaccccggtccaggccaaggccattccgcccgctctcgaaggcagcgacatcctc
gccactgcctccaccggcaccggcaagaccctcagcttcctcatcccgatgatccagcgc
atggacgcgaactcggtccccagcaccaagggcaagcgcggtcccattcgcgccctcatc
ctgctgccgactcgcgaactcgccatgcaggtcctcgaggcctactggaagctcgttccc
ggctccaagagcgacgcggtgctcgtctgcggcggtctttcggagaacaatcagctcgac
cagctcgaccgcggtcctcgtctcgtcgtcgcaacacctggccgcctcgaggacttcctc
cgacggcgcgaaatcaacatcaacgccgtcgaaatgctcgttctcgatgaagtcgatcgc
atgctcgacatgggcttccttcccgccatccgccgcatcgtcggcgcactgccgaagact
cgccagaccatgtgctactcggcaaccctcgatgccaacatccgcgagatcgtccgcgac
tacgtcaaggagcctgtccgcatcgagataggccagacctccaaacccagcgatcgcgtc
gaactgcgcgtctataccgtcatgcaggaccagaagctcggcctgctcgaccagatgctc
cgtcaggaagagggaaccttcctcgtcttctcacgcaccaaacacggcgctgaccgcatc
agcaagaagcttgagaagctcggacacgactccgacgttattcacggagatcgcagccag
tcccagcgaaccgccgctctcaagggctttgccaatggccgtcaccgcgtcctcgtcgcc
actgacgtagccgcccgcggcatcgacgtcaacgacatcgcgcacgtcgtcaactacgac
ctgcccaatgcctccgacgacttcgtccaccgcatcggccgcaccggccgcgccggcaag
aagggcgttgccactacgtttgtcatgccgcaggagcgtcacgacgcccgcaagctcgag
cgcgaactgaagataaagtttgagtggcgcgaggccgataagaatcttgagaaggaagtc
cgtaacgcacccctcgacacaacagctcagggacaggacctcatgcagcttgaaactcgc
tcttggaagggcaacgatcccgtcactccgatgacgacgcctaatgctaactacggcgcc
aaaaagagcggcttccgtagccgtaacggcggtggtggattctccggcggacgcagctcc
ggtggccgtggccccggcggtcgccccaacagcaacagccgccccggcagcagccgctcc
ggcccagctcgacgcggccagtaa
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