Thalassotalea psychrophila: RGQ13_06740
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Entry
RGQ13_06740 CDS
T10151
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpsy Thalassotalea psychrophila
Pathway
tpsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGQ13_06740 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpsy03400
]
RGQ13_06740 (mfd)
Enzymes [BR:
tpsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGQ13_06740 (mfd)
DNA repair and recombination proteins [BR:
tpsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RGQ13_06740 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
UB2H
Helicase_C_2
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
WNC73683
LinkDB
All DBs
Position
complement(1620938..1624465)
Genome browser
AA seq
1175 aa
AA seq
DB search
MSQTSSIFSPLLALSKVDANLKDKKQWANLHGSSASIAIYFAAANSKSLTLLVTEDTATA
LKLEHELLSINDQDLDICLFPDWETLPYDSFSPHQDIISQRLQTLYRLSRMNKGIVIVPA
HTLVHRIAPKQYIEANSLLIKTGDKKDLHKMRAELEASGYRAVEQVLEHGEFSARGAILD
LYPMGNNTPYRLDFFDDEIDSIRTFDVEDQRSKDTIASIELLPAHEFPTDKAAIELFRNQ
YREILKANNDKDSVYHQVSKNILPAGIEYYLPLFFEQTETLFDYLPLNTQVLIHGDIDKN
LEQFNLDAQYRYEDRRYDPLRPLLPPEKLFLTREQLFSTLKHHDRVNIKVADKESQAIKL
NDKAGNVNYATAALPEVAVNHQLKKPLQAVCQFLEDAAEHNQQVLFVAESQGRRETLLEL
LSREKIAPKNVDDISSFISSELQIAITVNALNHGFIVSQADSKAALNFAIITEDDLFTDR
VKQARRRTKKQETNSEAIFKNLTELSINQPVVHIEHGIGRYQGLQTFENQGINTEFLMLS
YANDAKLYVPVASLHLISRYSGSNSDTTPIHRLGTDSWSKAKKKAAEKIKDVAADLLDIY
AKRAQSHGYAFKRNKEDYISFAESFGFEETLDQQNAITNVIADMLDHKTMDRLVCGDVGF
GKTEVAMRAAFIAANDSKQVVILVPTTLLAQQHYENFKDRFVNWPVNIEVLSRFKTAKQQ
KEVIANIATGQIDILIGTHKLLSDDIKFKDLGLLIVDEEHRFGVKQKEKIKKLRSNVDIL
TLTATPIPRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRERESALIRESVLREVLRGGQV
YFLHNNVQTIEKTAQELQDLLPEAKIIVAHGQMRERELERIMSDFYHQRYNVLVCTTIIE
TGIDIPTANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDA
ISQLEDLGAGFALATHDLEIRGAGELLGEDQSGQMASIGFSLYMEMLDQAVAALKEGKQP
SLEDLTAKQTEIELRVPALIPDDYIYDVSMRLSFYKRIASCKDNHELDEIQIELIDRFGL
LPQATKHIFFIAKLRLSAEDIGIARVDAGINGGSIEFNSNTKIDPMLIIGLIQQQPSIYK
MDGANKLKFAIKTEDNQARFTLISKMIDSLNKSIA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaaccagtagtatattttcgcctttattagctttaagtaaagttgatgccaat
ttaaaagacaaaaagcagtgggctaacttgcatggttcaagtgccagtattgcaatttac
tttgctgcggctaactccaaaagtcttacgttattagttaccgaagataccgcaacagcg
cttaaacttgaacatgaattactcagcattaatgatcaagatttagatatatgcttattc
cctgattgggagactctgccatacgatagcttttcgccacatcaagatattatctcgcaa
aggctgcaaaccctttatcgcttatcacgaatgaacaaaggcattgtcattgttccggcc
cacacattagtacaccgcatagcgcctaaacaatatattgaggcaaacagcttactaatt
aaaactggagataaaaaagatcttcataaaatgcgtgcagagcttgaagcaagtggttat
cgagcagtagaacaagtgcttgaacatggcgaatttagtgcccgaggtgctattttagat
ctatatccaatgggcaataacacgccatatcggttagattttttcgatgatgaaatcgac
agtattcgcacctttgatgttgaagatcaacgctcaaaagacaccattgccagtattgag
ttattacctgctcatgagttcccaacagataaagcggcaatagaattatttagaaaccaa
taccgtgaaattttaaaagcaaacaacgataaagactctgtatatcatcaggtcagtaaa
aatattttacccgctggtatcgaatattatttaccgctattttttgagcaaactgaaacc
ttgtttgattatttaccactaaatacgcaagtattaattcatggtgacatcgataaaaac
cttgagcaattcaatttagatgcgcaataccgttatgaagacagacgctacgatccatta
aggcctttactgccaccagaaaagttatttttgactcgagaacaattgttttcaacgtta
aagcatcacgaccgagttaatataaaagtagcggataaagaaagccaagcaattaagctt
aatgacaaagcgggtaatgttaattatgcaacagctgctttaccagaggtggctgttaat
catcagcttaaaaagcctttgcaagcggtttgtcagtttttagaagatgctgctgaacac
aaccagcaagtactatttgttgccgaaagccaaggccgaagagaaacactgttagaatta
ctttcccgtgaaaaaatagctcctaaaaacgttgatgatataagcagttttatttcatct
gagctgcaaattgcaattacagttaatgcgttaaatcacggttttattgtttctcaggca
gacagcaaggcagctctaaactttgcaattattactgaagatgatttattcaccgacaga
gtaaagcaagcaaggcgtagaactaaaaaacaagaaaccaacagcgaagcgatatttaaa
aacctcactgaactgtcaataaatcaacctgtagtgcatatcgaacacggtatcggtcgc
tatcaaggcttacagacttttgaaaaccaggggattaacactgagtttttaatgctcagt
tacgctaatgatgccaaactttatgtgcctgttgcctcattacatttaatttctcgctat
tcgggctccaacagtgacactacccctatccataggctgggtacagactcttggtcaaaa
gcgaagaaaaaagccgctgaaaaaattaaagatgtggccgccgatttactcgatatttat
gctaaacgagcacaaagtcatggttatgcttttaaacgaaataaagaagattatataagt
tttgccgaaagctttggctttgaagaaacattagatcaacaaaatgcaattaccaatgtt
attgccgacatgctggatcacaaaaccatggatcgattggtttgtggtgatgttggtttt
ggtaaaacagaagtagctatgcgcgcagcatttattgctgcaaatgattcaaaacaagtt
gttatattagtaccaacaaccttacttgctcagcaacattatgaaaactttaaagacagg
tttgttaactggccagtaaatattgaagtactttctcgctttaaaaccgcgaaacagcaa
aaagaagttattgccaatatcgctaccggccaaattgacattttgatcggtactcataag
ttattgtctgatgatattaagtttaaagatttaggcttacttattgttgatgaagagcac
cgctttggggttaaacaaaaagaaaaaattaaaaaactacgttctaatgttgatatttta
acccttaccgctacccctattccaagaacattgaatatggccatgggtggaatgcgcgat
ttatcaataattgctacacctccagcaaaacggttagctgttaaaacctttgtacgtgaa
cgtgaaagtgcattgatcagagaatcagttttacgtgaagttttacgtggtggtcaagtt
tacttcttgcataataatgtacaaactattgaaaaaacggcgcaagaacttcaagacttg
ctgccagaagctaaaattattgttgcccatggtcaaatgcgagaacgtgaattagagcgc
atcatgagtgatttctatcaccaacgatataatgttttagtgtgtactaccattattgaa
accggtatagatattccaacagcaaacaccataataatggatagagccgatcatttaggt
ttggcgcaattacatcaattacgcggccgtgtaggtcgatcgcaccatcaggcttatgct
tatttactaacaccacatcctaaacgcatgactaaagatgctgctaagcgactggatgct
atttcacagttagaagatttaggcgcaggttttgcgttagcgacccatgatttagaaatt
cgtggcgcaggtgaacttttaggtgaagatcaatcagggcaaatggcaagtattggcttt
agcttatacatggagatgctagatcaagcagttgcggcgttaaaagaaggcaaacagcca
tcattagaagatttaaccgctaagcagactgaaattgagttgcgagtgcctgcattaatc
ccagatgattacatctatgatgtcagtatgcgtttatcgttttataaacgtatagccagt
tgtaaggacaatcatgaattagatgaaattcaaattgagttaattgatcgttttggactg
ttaccacaagctaccaaacacatttttttcattgcgaaacttcgtttaagcgcagaagat
attggtatcgctagagtcgatgcaggtataaatggtggttcgatagaatttaatagcaac
actaaaattgatcctatgcttataataggcttgatccaacaacaaccatcaatatacaaa
atggatggcgctaataaactaaaatttgcgatcaaaacagaagacaatcaagcgcgcttt
accttaatcagcaagatgatagacagtttaaacaaaagtattgcctaa
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