Thalassotalea psychrophila: RGQ13_13005
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Entry
RGQ13_13005 CDS
T10151
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tpsy Thalassotalea psychrophila
Pathway
tpsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGQ13_13005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpsy03019
]
RGQ13_13005
Enzymes [BR:
tpsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGQ13_13005
Messenger RNA biogenesis [BR:
tpsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGQ13_13005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Terminase_3
UvrD-helicase
AAA_22
P-loop_SecA
Cas3-like_C_2
TMEM260_2
Motif
Other DBs
NCBI-ProteinID:
WNC71043
UniProt:
A0ABY9TQE7
LinkDB
All DBs
Position
complement(3180237..3181538)
Genome browser
AA seq
433 aa
AA seq
DB search
MSFDSIGLPDNLLKAVKACGYTSMTPIQQRAIPAVRAGQDVLASAQTGTGKTAAFALPII
EQLLKHKASTMPVVRALILTPTRELAKQVAENIREYTQFTELKTAVVFGGVDSAGQIKNL
KAGADILVATPGRLQEHLEARNVSLTQVKFAVLDEADRMLDMGFVKDIESILQTVKHQHQ
TLLFSATFSNKVKTLTKQFLTNPRILETAKQNATASKVRHYVYPVVEERKSEMLAELIGV
NNWKQVMVFAGTKESANQIAKELKLDGIKAALCHGDRSQGSRNKALEDFAEGKVRVLVAT
DVAARGIDIEDLEYVVNYHLPFLPEDYIHRIGRTGRAGKSGTAISFVSPKDNKFLGNIEE
VVGYSIEQVKLKGYEFDPLDYATKSEKKAAASNTSTRNRYQAQQDKNRSVAKKRTDVGRP
KAKQKRASRYSTK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgattctattggcttaccagataatttattgaaagctgtaaaagcatgcggc
tatacaagtatgacgccaattcaacagcgtgctattcctgctgttcgcgctggtcaagac
gtattagcaagtgcacaaacaggtacaggtaaaacagctgcatttgcactgccaattatt
gagcaacttttaaagcacaaagcatcgactatgccagttgttcgtgcgctaattctaacg
cccactcgagagcttgctaagcaagttgcagagaatattcgcgagtacactcaatttact
gaattaaaaacagctgtagtgtttggtggtgtagactcagctggtcagatcaaaaattta
aaagctggtgccgatattttggttgctacaccaggtcgtttgcaagagcacttagaagca
cgaaacgttagcctaacgcaggtgaaatttgctgtgctcgatgaagctgatcgtatgttg
gatatgggtttcgtgaaagacattgagtcaattttacaaacagttaaacatcaacatcaa
acgttattattttcggcaacattttctaataaagtgaaaacgctgactaaacagttttta
actaaccctagaattttagaaacagccaagcaaaatgctacagcatcaaaagttcgtcac
tatgtttatcctgtcgttgaagaacgcaaaagcgaaatgctagcagagttaatcggtgta
aataactggaagcaggtaatggtatttgccggcacaaaagaaagtgctaatcaaattgcc
aaagagttaaagcttgacggtatcaaagctgcactatgtcatggcgacagatcacaaggc
tcacgtaataaagcgctagaagactttgccgaaggtaaagtaagagtgcttgttgcaaca
gatgttgctgctcgtggtatagatattgaagacttagagtatgtagttaattatcattta
ccatttctacctgaagattatatccatcgcattggccgcactggccgagcgggtaagtct
ggtactgcaatttcatttgtatcacctaaagataataagtttttaggcaacatagaagaa
gttgttggttacagtattgaacaagtaaaattgaaaggttatgagttcgatcctctggat
tatgcaactaaatccgagaaaaaagcggcagcaagcaatactagcactagaaaccgctat
caggcacagcaagataagaatcgaagtgtagccaaaaaacgtacagacgtaggcaggcct
aaagccaagcaaaaacgtgcaagtcgttattcaacaaaataa
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