Thalassotalea psychrophila: RGQ13_13350
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Entry
RGQ13_13350 CDS
T10151
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
tpsy Thalassotalea psychrophila
Pathway
tpsy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tpsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGQ13_13350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tpsy03000
]
RGQ13_13350
03400 DNA repair and recombination proteins [BR:
tpsy03400
]
RGQ13_13350
Enzymes [BR:
tpsy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
RGQ13_13350
Transcription factors [BR:
tpsy03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RGQ13_13350
DNA repair and recombination proteins [BR:
tpsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RGQ13_13350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_26
Motif
Other DBs
NCBI-ProteinID:
WNC71105
UniProt:
A0ABY9TTN5
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All DBs
Position
3261200..3262681
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AA seq
493 aa
AA seq
DB search
MKLDPQVCMQARLSRDSRFDGKFYTAVITTGIYCRPTCPAGPAHEKNVSYYQSAAQAEFN
GYQPCKRCKPELSPNQPLPKTIDQALTLITIEPQIHVADLAIRIGLSERQLQRLFNDNLG
VSPNTFINQKRQINARNLLISSTIPFADVALISGFGSVRSFNDHIKQQYKLTPSELRESS
KQEKVNHLKLQLAYSGDLNWPLMLSFFKARQIPGVEAVTDKYRRTINIDNCTGWIAVSKP
DNGNYLSVDIWVNDFSKLAEIISRVRKMFDLDCNLNLIRTNLAKHQILKPIIDDYPGLRL
PGCWDIFEFSIRAILGQQISVKAATTLAGRIAEKFSTPITNLNTESHYPQGLSILFPSAE
TLATVSFDDIGITNTRQQTLHTWIEFFIANKSLFNNPKDTESFEKTLCELKGIGPWTANY
MAMRGLSLPDAFPAADLGLIKALSNKPQLRHELKLADDKQLTGKQILTIAESWRPWRAYA
AIYLWQSLSTNQE
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagatccccaagtttgcatgcaagcaagactgtctcgtgattctcgctttgat
ggcaaattttatacggctgttatcaccacaggcatttattgccgtcctacttgcccagca
ggccctgcccatgaaaaaaatgtcagctattaccaaagtgcggcccaagctgaatttaac
ggctaccagccttgtaaacgttgtaagccagagctgtctccaaaccagccattaccgaaa
acgatagaccaagcattaacattaataactatagaaccacaaattcatgtagccgattta
gccataagaataggcttaagtgaacgccagttgcaacgcctatttaacgataatttaggc
gtatcaccaaatacgtttataaaccaaaagcgtcaaattaatgctcgtaatttattaatt
agctcaacaataccgtttgctgatgttgcgttaatcagtgggtttggcagtgtgcgcagt
tttaatgatcatatcaaacagcaatataaattaacgccaagtgagcttagggaaagtagc
aaacaagaaaaggtaaatcatttaaaactacagttagcatatagtggcgatttaaattgg
ccattaatgctgagttttttcaaagctcgacaaataccaggcgtagaagcggtaactgat
aaatatcgtcgtaccataaacatcgataactgtaccggctggattgcagtcagtaaaccc
gataatggcaattatttatcagtcgacatttgggttaatgatttttctaaattagctgaa
atcattagccgagtaagaaaaatgtttgatctagattgcaatctaaacttgattagaaca
aaccttgcgaaacaccaaattttaaaacctattattgatgactacccaggattacgactt
cctgggtgttgggatatttttgaattttcaattagagctattttagggcaacaaatatcg
gtcaaagctgcgacgaccttggctggacgtattgccgagaaattctcaacaccaataaca
aatttgaatactgagtcacattatccacaaggcttgtcgatattatttccaagtgcagaa
acacttgctacggttagtttcgatgacattggcataaccaacactaggcaacaaacatta
catacctggatagagttctttattgctaataagtcattatttaataatcccaaagatact
gaaagttttgaaaaaacgctatgcgaacttaaaggtattggtccttggacagcgaactac
atggcgatgcgtggtctaagtttacctgatgcatttccagcagcagaccttggtttgatc
aaggcactctcaaataagccccaattgagacatgaattaaaacttgccgatgacaaacaa
ctaaccggtaaacaaatattaacgattgctgaatcatggcgaccttggcgtgcctatgca
gccatttatttatggcagtcattatcgaccaaccaagaataa
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