Thalassotalea psychrophila: RGQ13_13985
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Entry
RGQ13_13985 CDS
T10151
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpsy Thalassotalea psychrophila
Pathway
tpsy03018
RNA degradation
Brite
Enzymes [BR:
tpsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGQ13_13985
Messenger RNA biogenesis [BR:
tpsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGQ13_13985
Ribosome biogenesis [BR:
tpsy03009
]
Prokaryotic type
rRNA helicases
RGQ13_13985
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WNC71227
LinkDB
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Position
complement(3411155..3413038)
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AA seq
627 aa
AA seq
DB search
MNFFAVIYRKGIDLPVEKTKLMTELNNATVSFESLGLPEVLLSALNAMGFVNPTPIQEKT
IGPLIEGRDVLGEAQTGTGKTAAFGLPALANIDVKLKKPQMMVLAPTRELAIQVAEAIED
FAKNMKGLRVATLYGGQSYGPQLSQLEKGAQVVVGTPGRLMDHLRRKTLKLADVKFCALD
EADEMLNMGFLEDIEWILDHLAKETQMALFSATMPPAIKKIADRFLDNPVHVKIAAKKES
KKNITQLAWRVSGITKQTALERIIESFDFDAVLIFVRTRNDTITISEQLERLGYPCAALN
GDMNQAQRERTVEQLKNGKLSIMVATDVVARGLDIQRIDLVINYDIPGETESYVHRIGRT
GRAGREGTAISFVRPREFYNVRHYERATAGTVNEYNLPTIQEIGLSRIERCRKSLIASVA
DKDLSSMREILEKMAADSEVDMADLAAALLFDKQLKQPLQPKEDVRPRRERSDRDSRDSR
ETRGRDRNDRGGRDRNDRNGRGERSDRGERKERRQSSGARPDVDWQAYRIEVGKDHGARP
GDIVGAIANEISLDSAYIGQINLNDNHTIVQLPKGMPKDAFQKLRSVQIRRQRLDISVSD
APVEAQVRKPRRENSDRKPRGERSARH
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttttcgcagttatttaccgtaaaggtattgatctgcctgttgagaagacaaaa
ttaatgactgaattaaacaacgctactgttagctttgaatctttaggtttgcctgaagta
ttattatctgcactaaacgctatgggttttgtaaaccctacacctatccaagaaaaaact
attggccctttaattgaaggtcgtgacgttttaggtgaagcacaaactggtacaggtaaa
actgctgcttttggtttacctgcacttgctaacattgacgttaaattaaagaaaccacaa
atgatggttttagcaccaactcgtgagcttgctatccaagtagctgaagcaatcgaagat
tttgctaaaaacatgaaaggcttacgtgtagcaactctttatggtggtcaatcttacggt
ccacaactttcgcaactagaaaaaggtgcacaagttgttgttggtactcctggtcgctta
atggatcacttacgtcgtaaaacattaaagttagctgacgttaaattttgtgctctagat
gaagctgatgaaatgcttaacatgggtttcttagaagatattgagtggatccttgatcac
ttagctaaagaaacacaaatggcattgttctctgcaactatgcctccagcaatcaaaaag
attgcagaccgcttcttagataatcctgtacatgtaaaaattgcagcgaaaaaagagtct
aaaaagaacattactcagcttgcatggcgagtaagtggtattactaaacaaactgccctt
gaacgcataattgaatcatttgatttcgacgctgtgcttatcttcgttcgaactcgtaac
gatacaataactatttctgagcaattagaacgtttaggttacccatgtgcagcgttaaac
ggtgacatgaaccaagcacaacgtgaacgtacggttgagcaacttaaaaatggtaagctt
tctatcatggtagcaactgatgttgttgctcgtggtttagatattcaacgtattgaccta
gttatcaactacgatattccaggtgaaactgaatcttatgttcaccgtattggtcgtact
ggccgtgccggtcgtgaaggtacagcaatttcatttgtacgtcctcgtgagttttataat
gttcgtcactacgaacgtgctactgcaggtactgttaacgaatataacttaccgacgatt
caagaaattggtttgtcacgtatagagcgttgtcgtaaatcgttaattgcttcagttgct
gataaagatttatcaagcatgcgtgaaattttagagaaaatggcagcagactcagaagtt
gatatggctgacttagcggcggcattattgtttgataaacaattaaagcaacctctacaa
ccgaaagaagatgtacgtcctcgtcgtgaacgttcagaccgtgattcacgcgattctcgt
gaaactcgtggcagagatcgtaatgaccgtggtggccgtgatcgtaatgaccgtaatggt
cgtggcgaacgcagcgatcgtggtgagcgtaaagaacgtcgtcaatcgtcaggtgcacgt
ccagacgtagattggcaagcataccgcattgaagtaggtaaagatcacggtgctcgtcca
ggtgatatcgttggcgcaattgctaacgaaatttcattagacagtgcatacataggtcaa
atcaacttgaatgacaaccacactattgtacaactaccaaaaggcatgccaaaagatgca
ttccaaaagttacgtagtgtacaaatacgtcgtcaacgtttagacatctcagtgtcagat
gctccggttgaagcgcaagtacgtaagcctcgtagagagaatagtgaccgtaagcctcgt
ggtgagcgttctgcacgtcactaa
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