Thalassotalea psychrophila: RGQ13_18620
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Entry
RGQ13_18620 CDS
T10151
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tpsy Thalassotalea psychrophila
Pathway
tpsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGQ13_18620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpsy03019
]
RGQ13_18620
Enzymes [BR:
tpsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGQ13_18620
Messenger RNA biogenesis [BR:
tpsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGQ13_18620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WNC72110
UniProt:
A0ABY9TWG3
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All DBs
Position
complement(4465167..4466468)
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AA seq
433 aa
AA seq
DB search
MTTVTTPANFTELGLISPLLARLAELGYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTA
TFALPILQQIFVQQQAEKPLSSKSSKGNYVAGLILVPTRELAKQVADSIKSYAVHFNGVI
KTVAVFGGVSANTQMLALRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSL
GFTAELSELLALTPSSKQTLLFSATFPEQVQALTQELLNNPVEIQVQSSDASTLVQRVFT
VNKGEKTAVLAHLIIQQQWRQALIFVNAKNSCNHLAEKLSKRGIAAEVFHGDKGQGARSR
VLDSFKAGEIEVLIATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLAL
SLIDHEDYHHFKVIEKKNKIRLEREQVEGFEADEVNLSSVDKPMAKPEGSGKKKRKNKAP
VNADIWAGYSDSE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgactactgtcacaacgccagcaaactttactgaacttggccttatttcacctttgtta
gctcgattagctgagttgggatatcagcagccaacgcccattcaagcacaagctattcca
agtgtattagcaggccgtgatttaattgcaggggcaaatactggctcgggtaaaacagct
acctttgcgctacctattttgcagcagatctttgtacaacagcaggctgaaaaaccactg
agtagcaaaagcagtaaaggtaactatgttgccggattgattttggtgcctacccgtgaa
ctagctaagcaagttgctgacagcattaaatcttatgcggtgcattttaacggcgtgatt
aaaacggttgctgtttttggtggtgtctcagcgaatactcagatgctcgcattacgaggc
ggcactgatattttggttgctacgcctggtcgattactcgatttaatttcaagtaatgcc
attaagctagatagggttaaaaccttagtgcttgatgaagccgatcggatgttaagttta
ggttttactgccgagttatctgagctattagcattaacgccgtcgagcaaacaaacctta
ttattttccgcgacctttcctgagcaagtacaggcgttaactcaagaattgctcaacaac
ccagttgaaatacaagtgcagagtagcgacgccagtaccctggtgcagcgcgttttcacc
gttaacaaaggcgaaaaaacagctgtattagcgcatttgatcatacaacagcaatggcga
caagcacttattttcgtcaatgccaaaaacagctgtaatcacttagctgaaaaactctct
aaacgtggtattgctgccgaagtgtttcatggcgataagggccaaggcgcacgtagtcgt
gtacttgactcttttaaagcgggtgagattgaagtgttaattgcaactgacattgctgct
cgcggcctagacatcgaaaagctgccggtggtgatcaattttgacttaccaagaagtcca
tcagactacatgcaccgtattggtcgaagtggccgtgccggtgaagtgggtttagcgtta
tcgcttatcgatcatgaagattatcaccattttaaagtcatcgaaaagaagaacaagatt
cgtcttgaacgtgagcaagtagagggttttgaagccgatgaagttaacctttcaagcgta
gataaaccgatggcaaaacctgaaggtagcggtaagaaaaaacgcaaaaataaagcgcca
gtgaatgcagatatttgggcgggatattctgattctgagtaa
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