Thermotoga petrophila RKU-1: Tpet_1172
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Entry
Tpet_1172 CDS
T00525
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tpt
Thermotoga petrophila RKU-1
Pathway
tpt03030
DNA replication
tpt03410
Base excision repair
tpt03420
Nucleotide excision repair
tpt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tpet_1172
03410 Base excision repair
Tpet_1172
03420 Nucleotide excision repair
Tpet_1172
03440 Homologous recombination
Tpet_1172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpt03032
]
Tpet_1172
03400 DNA repair and recombination proteins [BR:
tpt03400
]
Tpet_1172
Enzymes [BR:
tpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Tpet_1172
DNA replication proteins [BR:
tpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tpet_1172
DNA repair and recombination proteins [BR:
tpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Tpet_1172
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tpet_1172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
DNA_pol_lambd_f
Ribosomal_L12
Motif
Other DBs
NCBI-ProteinID:
ABQ47186
UniProt:
A5ILW3
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All DBs
Position
1196064..1198745
Genome browser
AA seq
893 aa
AA seq
DB search
MARLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVGKDYAAVA
FDKRAATFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATL
AVKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPHQIP
DLLALTGDEIDNIPGVTGIGEKTAVQLLEKYRDLEDILNHIHELPQKTRKTMLRDRESAI
LSKKLAILETNVPIEINWEELRYQGHDREKLLSLLKELEFASIMKELQLYEESEPVGYRI
VKDPVEFEKLVEKLKETPSFAIDLETSSLDPFECDIAGISLSFKPKEAYYIPLHHRNAQN
LDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGIEPVPPHFDTMIAAYLIEPNEKK
FNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFVDVPLEKAANYSCEDADITYRLYKTLS
LKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIA
GEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKI
QKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLSSSDPNLQNLPTKSEEGKEIRKAI
VPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKPEEVTEE
MRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEK
GYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPIQGTAADIIKLAMIEIDRELKERKM
RSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNVVKLSVPLEVDVTIGKTWS
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggctatttctctttgatggaaccgctctggcttacagagcgtattatgcgctc
gatagatcgctttccacctccgccggcattcccacaaacgccacgtacggtgtggcgagg
atgctggtgagattcatcaaagaccatatcatcgtcgggaaagactacgctgctgtggct
ttcgacaaaagagctgctaccttcaggcacaagctcctcgagacttacaaggctcaaaga
ccaaagactccggatctcctgatccagcaacttccgtacataaaaagacttgttgaagcg
cttggaatgaaggtgctggagatagagggatacgaagcagacgatataattgccactctg
gctgtgaaggggctttcgcttttcgacgagatattcatagtgactggtgacaaagatatg
cttcagcttgtgaacgaaaagatcaaggtgtggcgaatcgtaaaagggatctccgacctg
gaactttacgatgcacagaaggtgaaggaaaaatacggtgttgaaccccatcagattccc
gatcttctggctctaaccggagacgaaatagacaacatccccggtgtgaccgggataggt
gaaaaaacggccgttcagctcctcgagaaatacagagacctcgaagacatcctgaatcat
attcacgaacttcctcaaaagacgagaaaaaccatgcttcgggacagagaaagtgccatt
ctcagcaaaaagctggcgattctggaaacaaacgttcccatcgaaataaactgggaagaa
cttcgctaccagggccacgacagagagaaactcctgtcactcttgaaagaactggaattc
gcatccatcatgaaggaactccaactgtacgaagagtccgaacctgttggatacagaata
gtgaaagatccggtggaatttgaaaaactcgtagagaagctgaaagaaaccccttcgttt
gccatagatcttgaaacgtcttccctcgatcccttcgaatgcgacattgctggtatttcc
ttgtcattcaaaccgaaggaagcgtactacataccactccatcacagaaacgcccagaac
ctggatgaaaaagaggtcttgaaaaagctaaaagaaatcctggaggatcctggagcaaag
atcgttggtcagaatctgaaattcgactacaaggttttgatggtaaagggtatagaacct
gtccctcctcacttcgacacgatgatagcggcttaccttattgaaccgaacgaaaaaaaa
ttcaatctggacgatctcgcacttaaatttctcggttacaaaatgacttcctaccaggaa
ctcatgtctttctcctcaccgctgtttggtttcagttttgtcgatgttcctctggaaaaa
gcagcgaactattcctgtgaagatgcagacatcacctacaggctctacaagaccctgagc
ttaaaactccacgaggcagatctggagaacgtgttctacaagatagaaatgcctcttgta
agcgtgcttgcacggatggaactgaacggtgtgtacgtggacacagagttcctgaagaaa
ctctcagaagagtacggaaaaaaactcgaagaactggcagaggaaatatacaggatagct
ggagaaccgttcaacataaactcaccgaaacaggtttcaaggatcctctttgaaaaactc
ggcataaaaccacgtggtaaaacgacgaaaacgggagactactcaacacgcatagaagtc
ctcgaggaacttgccggtgaacacgaaatcattcctctgattctcgaatacagaaagata
cagaaattgaaatcaacctacatagacgccctccccaagatggtcaacccaaagaccgga
agaattcatgcttctttcaatcaaacggggactgccactggaagactcagcagcagcgat
cccaaccttcagaacctcccgacgaaaagcgaagagggaaaagaaatcaggaaagcgata
gttcctcaggatccaaactggtggatcgtcagcgccgactactcccagatagaactgagg
attcttgcccatctcagtggtgatgagaatcttttgagggcattcgaagagggcatcgac
gtccacactctaacagcttccagaatattcaacgtgaaacccgaagaggtaactgaagag
atgcgccgcgccggtaaaatggtgaatttttccatcatatacggagtaacaccttatggt
ctgtctgtgaggcttggggtacctgtgaaagaagcagaaaagatgatcgtcaactacttc
gtcctctacccaaaggtgcgcgattacattcagagggtcgtatcggaagcgaaagaaaaa
ggctatgttagaacgctgtttggaagaaaaagagacataccacagctcatggcccgggac
aggaacacacaggctgaaggagaacgaattgccataaacactcccatacagggtacagca
gcggatataataaagctggctatgatagaaatagacagggaactgaaagaaagaaaaatg
agatcgaagatgatcatacaggtccacgacgaactggtttttgaagtgcccaatgaggaa
aaggacgcgctcgtcgagctggtgaaagacagaatgacgaatgtggtaaagctttcagtg
ccgctcgaagtggatgtaaccatcggcaaaacatggtcgtga
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