Thermotoga petrophila RKU-1: Tpet_1246
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Entry
Tpet_1246 CDS
T00525
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tpt
Thermotoga petrophila RKU-1
Pathway
tpt03410
Base excision repair
tpt03430
Mismatch repair
tpt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Tpet_1246
03430 Mismatch repair
Tpet_1246
03440 Homologous recombination
Tpet_1246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpt03400
]
Tpet_1246
DNA repair and recombination proteins [BR:
tpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Tpet_1246
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Tpet_1246
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tpet_1246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABQ47260
UniProt:
A5IM37
LinkDB
All DBs
Position
1261079..1263946
Genome browser
AA seq
955 aa
AA seq
DB search
MKKWELSQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFINESHQHNPFLFN
DMEKAVETLLEARSRNELVLIHGDYDVDGITSTVILKEFLEENGWRVDVYIPHRIEEGYG
IQLENILTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIITDHHEVNGDLPPADAIVN
PKVPGENYPFRDLAGVGVTYKLVQAISEAINYPHPERFLELVALGTVADMVSLLDENRYF
VKKGIELLSNTKRVGLKRLLERLGLKNLTSHDISYKIAPRLNAAGRMGSANDAFNLLIMN
DPAKADGVVDRLMELNSIRRKTEWAIYKEAIEIIETNDLWKDPVIVVAKENWHVGVIGIV
AAKLANRYEKPVAVVSLDEKIAKGSIRSYNGYDIMNIFNEDILKIFEEIGGHSSAVGFSL
KRDQLESFREYIRNISLEGREEKVIVDAEVRMEDIDDRFIEDIKKLMPFGQGNPEPVLLF
KDVLIEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSSSLSTLPVTPTRGDVVVNLR
PMGNGISYYLVSLDVKPILSVKNREVSHILSRPKEEKTLIKVPYPSKTKLLLSIKEELQG
KLAIVSLTNATTQNILGCLSRYYTSKNLGFVNSTFSKEEESDIVLFTLAGFLKKHRLDDF
EVFVVNEFQDFLAHRDSELVKNFLDIVDKHPGKFIFVASIEHPELEEFLKKEKYDVVELR
TDEPEKFLFSDQRNSFDLGSLVDAHSFAVVVSEKKLIPDLYRKIGKDAVVYYTSMDVEKK
IKAISLMESGSARKAIITSNTDGLPTHIKGDIFFYDFPLSIYEIVDLLRRKSVVNLCYSS
SDIEKRRYELNKLFPDREKLKEIAITAMNLKDKEKLEKILESEYDLSSATLRKIYLDLLE
ESGFNFDRWSFSEDERIPWRLLERELEIAQFERTVSVLSKDLKWIFNFFKDTVVK
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtgggaactttcacagcctgatgagaaggctgtgtcagagatttctcagtat
tttggtctcaatgaaattgcatcgagaatactcgtgaacagaggcttcaccaccagagaa
gcggtagaggctttcctgttcatcaatgaatcccaccagcacaatccctttctcttcaac
gatatggaaaaagcggttgaaaccctgcttgaagcccggtccaggaacgagctcgttctg
attcacggagactacgatgtggatgggataacttccaccgttatattgaaggaatttctc
gaagagaacggctggcgcgttgatgtttatattccacaccgtatcgaagagggatacggt
attcagctggaaaacatcttgacttttaaagagaacaacgtttcctgtcttgtaacggtt
gactgcggaataaccgcactggattcggtcgctcttgcgaaaaaattcggaatgaaagtg
atcatcacagaccaccacgaggtgaacggtgacctcccccccgccgatgccattgtgaac
ccgaaagtacctggagagaactacccattcagagatcttgcgggtgtcggtgtaacctac
aaactcgtccaggccatttctgaggcgatcaattatccccatcccgagagatttttggag
ctggtagctcttggaacggtcgctgatatggtctccctccttgacgaaaacagatacttc
gtgaaaaaaggaatagaactgctttcaaacacaaaacgcgtgggcttaaagaggcttctg
gaaagacttggcctgaagaacctcacatcgcacgatatcagttacaaaatagctccccgt
ctcaacgccgctggccgtatgggcagtgccaacgacgccttcaatttactgataatgaac
gatccagcgaaagcggacggtgttgtggataggttgatggagctgaacagcatcagaagg
aaaacagaatgggcgatatacaaagaagcaattgaaataatcgagacaaacgatctgtgg
aaagatcccgtcatagtcgttgcaaaagaaaactggcacgtgggagtcatcggcatagtc
gctgccaaactggcaaatcgttatgaaaaacccgttgcagtcgtctctctggacgagaag
atagcgaaaggttccataaggagctacaacggttatgacataatgaacattttcaacgaa
gatattctcaaaatattcgaggagataggtggccattcttcagcggttggtttctccttg
aaaagagaccaactggaatcgttcagggaatacatcagaaacatttctctggagggacga
gaagagaaggtgatcgttgatgctgaagtcagaatggaagatattgatgatcgcttcatt
gaagatataaaaaaactcatgcccttcggtcagggaaatccggaacctgttcttctcttc
aaagacgtactgatagaaaagattcatttctttggagaagacggtagcaacgtgttcctt
cacctgaaaaacggcgaaaagaacctggaagttgtgggatacaatttcaagaacctctcg
agttctctctctacattaccagtaactcccaccagaggagacgttgtggtgaatctacgt
cccatgggaaatggaatttcttactatcttgtctcgctggatgtaaagcctattctttct
gtaaaaaacagagaagtgagtcatatactgagtagacctaaagaagaaaaaacactgata
aaagtaccttacccatcaaaaacaaagcttctgctgtccataaaggaagagcttcaggga
aaactggcgatcgtttctttaacgaacgccacgactcaaaacattctggggtgcctttcg
aggtactacacctccaaaaacttgggatttgtaaattctaccttttccaaggaagaagaa
agcgatattgtcctcttcacccttgcaggttttctgaagaaacaccgtctggatgatttt
gaagtatttgtggtgaacgagttccaagattttctggcgcatcgcgacagcgaactggtc
aaaaacttcctggacatagtcgacaaacacccaggaaaattcatcttcgttgcctcgata
gaacacccagagctggaagagtttctgaaaaaggaaaaatacgatgtcgttgagctgaga
accgacgaaccggagaaatttctgttctccgatcagagaaattctttcgacttaggttct
cttgtggacgctcacagtttcgcggtggttgtttctgagaaaaaactcataccagatctt
tatcggaagattggcaaagatgcggtcgtttactacacaagcatggatgtggaaaagaaa
ataaaggcaatcagcttgatggagagcggttctgctcgaaaagcgatcatcacaagcaac
accgatgggcttccgacccacataaaaggcgatatcttcttttacgacttcccactcagc
atttacgaaatagtggatcttttgagaagaaaatcggtggttaacctctgctactcttcc
tccgacattgaaaagcgtcgatacgagctcaacaagctgtttccggatcgtgaaaagcta
aaagaaatagcgatcacagcgatgaatctgaaagacaaagaaaaactggagaagattttg
gagagcgagtacgatctgagcagtgccactttgagaaagatttatttggaccttctggaa
gaatccgggttcaacttcgatagatggagtttttcggaagatgaaaggataccttggaga
ttgcttgagagagagctcgaaatagcccagttcgaaaggacggtttccgttctttcaaag
gatctgaagtggatattcaactttttcaaggatacggtggtaaagtga
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