Thermotoga petrophila RKU-1: Tpet_1320
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Entry
Tpet_1320 CDS
T00525
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tpt
Thermotoga petrophila RKU-1
Pathway
tpt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tpet_1320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpt03021
]
Tpet_1320
03400 DNA repair and recombination proteins [BR:
tpt03400
]
Tpet_1320
Enzymes [BR:
tpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tpet_1320
Transcription machinery [BR:
tpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tpet_1320
DNA repair and recombination proteins [BR:
tpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tpet_1320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABQ47334
UniProt:
A5IMB1
LinkDB
All DBs
Position
1316006..1317016
Genome browser
AA seq
336 aa
AA seq
DB search
MIEFVIPKKLKVEEEREEKDYYYARFSLSPLERGYAITIGNALRRVLLSSIPSLAIVGVR
FIKPEKYHEYDYIEGVKEDILDIILNLKKVQFRVNVTVKGTIKMEVEKKGPGELVAGDIK
TPAGIEVANPDLHIATLNSKADLFFEVYAEVGKGFVPVSEREERPDVGWIPIDGVFSPVI
KVNFLTENVRVGKRTDYDKLILEIWTKKSIRPEEALRKAADILINHFKIVTEGLPELKIS
EEYIITSEEEEAEIPAVDHEEENRENLDVYNRKIDELELSVRSLNCLKRAKIETIGDLLS
KTEEELLKIKNFGQKSLDEVKEKLKEKFGLELRKGE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgatagagtttgtgataccgaaaaaattaaaggtggaggaagaacgagaggaaaaggac
tattattatgcaagattttcgctttctccgcttgaaagaggatatgccatcacgatagga
aacgcattgaggagagttcttctctcctccataccttctctcgcaatcgttggagtgaga
ttcataaagccagaaaagtaccatgaatacgattacattgaaggagtaaaagaagacata
ctggatataatcctgaacttgaagaaagttcagtttcgggtcaacgtgactgtgaaaggt
acaataaagatggaggtagaaaagaagggaccgggcgaacttgtcgcgggtgatataaag
acaccggctggtatcgaagtggcgaatccggatctacacatcgccaccttgaattctaaa
gcagatcttttcttcgaagtctacgcagaagtgggaaagggattcgttcccgtgtctgag
agggaagaaagacctgacgtgggatggattccaatagatggagttttcagccctgtgatc
aaagtgaactttctgacggaaaacgttcgtgttggaaagaggacggattacgacaagctc
attcttgaaatctggacgaagaaatcgataagacctgaagaggccctcagaaaggctgcg
gacatcctgataaatcatttcaaaatcgtgacggagggtctgcctgaactgaagatctcc
gaggaatacatcatcacatccgaggaagaagaagcagaaattcccgccgttgatcatgaa
gaagaaaacagggagaatctggatgtttacaacagaaagatagatgaactcgagctttcg
gtcagatctctcaactgtttgaagagagctaaaatagaaacgatcggagatcttctcagc
aaaacagaggaagagcttttgaagataaagaattttggtcagaaatctctcgatgaggtc
aaggagaaattgaaagaaaaattcggtcttgagctcaggaagggggaatga
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