Thermotoga petrophila RKU-1: Tpet_1344
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Entry
Tpet_1344 CDS
T00525
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpt
Thermotoga petrophila RKU-1
Pathway
tpt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tpet_1344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpt03400
]
Tpet_1344
Enzymes [BR:
tpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tpet_1344
DNA repair and recombination proteins [BR:
tpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tpet_1344
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_22
AAA_30
SecA_DEAD
AAA_16
ERCC3_RAD25_C
IstB_IS21
nSTAND_NTPase5
DUF8556
UB2H
AAA_25
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
ABQ47358
UniProt:
A5IMD5
LinkDB
All DBs
Position
complement(1333490..1336171)
Genome browser
AA seq
893 aa
AA seq
DB search
MVEILLLPNERFSNIEGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWKLLSGENLKIVTT
LKALTEKVFPPDFLRENSLMITRSTKLALSPEKLVEMGYERVFTVQNVGEFAIRGDIVDI
YSPGNDFPVRIELFGDEIEEIRFFNVDTQRSFQSVDRTLILPFVDFYGESTLLDFVKTEV
RFVCEDLQKVLDEYRKFRKEMRDLLKERYNDFFDERVVEVVLKNVEKGSAPLSTRIEKKE
SLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKYEDAVLYVPIEKIDR
VHKYIGDPSQVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMRRQEIQGLSLPGDPEL
EEKFAESFPYIETPDQQQSIEEVLSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVASG
KQVAVLVPTTVLARQHYENFKERMEPFGVKVELLDSSRTPREKKEIIEKLKKGEIDIIIG
THSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSG
MKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKL
KRMFPELEIAVAHGKMSRRTMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAH
RYGLSQLYQLRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDME
LRGVGDVLGLEQHGNVVSVGLKLYNEILKETITRFKERRIEKKHSVNVEIENPPGRFFIP
EDYVQNPVERLRLYRRLASSLDEEDLEEILEEMRDRFGEPPEEVKLLVDYFRLRIRASKL
GVKKIRFDHSMVEIFPNRDSPFLNHPRYNRRSGSVVLYTRENPVEFLMDLLKK
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggttgagattcttctgctgccgaacgaaaggttttcgaatatagaaggatacattttc
tatccttcgagagatgttttgcctctcgaagatgttgttttgtcacccgagataaaagga
aaaagaatagaaatcctgtggaaactgttgagcggagagaacctcaaaatagtcaccact
ctgaaagcactcaccgaaaaggtgtttccacccgattttctgagagaaaattccctgatg
ataacacgatccacaaaacttgccttgtctccagaaaaactcgttgaaatggggtatgaa
cgcgttttcaccgttcaaaatgtgggagaatttgccattcgtggagatatagtcgacatt
tattctccggggaacgactttcctgtaagaatagagttgttcggagacgaaatcgaagaa
atccgtttcttcaatgtagatacccaacgttcatttcagagtgttgatagaactctgata
cttccttttgttgatttctacggtgaaagcaccctgctcgattttgtaaaaacggaagtt
cgctttgtatgtgaagatcttcaaaaggttctggatgaatacagaaagttcaggaaagaa
atgagggaccttttgaaggaacgctacaacgacttctttgatgaaagagtagtcgaagtg
gtactcaaaaacgttgagaagggttctgcaccactatcaacacgtattgagaagaaagaa
tcgctgcccattctggatgtcgatgagatcgaagagggtggactcgtagttcacagagaa
cacggaatagccattttcgaaggggttgttcggctcaagggagttctcggagagagggat
tatttgaagttgaaatatgaagacgcagttttgtatgttcccatcgagaagatcgacaga
gttcataaatatataggtgatccttcgcaggttaaactcgaccggatgaaccgtggcaaa
tggaaacaaacactgaagaaagtgagagaagacatcgagaaaaagatcagagaactcgtt
gaactttacatgagaaggcaggaaattcagggtctttctcttccaggtgacccagaactg
gaagaaaaatttgcggaatcttttccatacattgaaacccccgatcagcaacagagtata
gaggaagtgctgagtgatcttgcctctgaaaaaccaatggacagactcctgtgtggagat
gcgggtgttggaaaaacagaagtagctttgcgagctgcgtttcgtgcagtcgcatctggt
aaacaggtagcggtgcttgtaccaaccaccgttctggcaagacaacactacgagaacttc
aaagagagaatggaaccgttcggtgtaaaagtggaactcctggacagttcaagaacaccg
agagaaaagaaggagatcatcgaaaagctgaagaagggagaaatagacatcatcataggt
acacactctctgttgaacgaacggatcgaattctccgatcttggtcttgtcatcatcgac
gaagaacaaaagtttggagttgagcaaaaagaaaggttcaagaaactgagactctcggtg
aacgtgctaaccctgagtgctacacctattccacgcaccctccacatggccctctctgga
atgaaagatttttctgtgataaattctcctccccctggaagaaaaccagtatacgtttat
gtcgcagagtacagcgatgatctcgtcaagggagcggtgatcagggagataaacagggga
ggtcaggtgatctacgttcacaaccgcgtggaagaactaccggaggttttcgaaaaactg
aaaaggatgtttccggagttggaaatagcggttgcccacggaaagatgtctagaagaact
atggagagaattgtccacgagttctaccgcgggaacatcgatgttcttctgtgtaccaca
attatcgagaatggtgttgatataccgaatgcaaacacactcatagtggatgacgcacac
agatacggcctttcacagctctatcagctcagaggaagggtgggtagaagcgaccgaagg
gcctttgcgtacttcctgtacccaaagggtactccaagaagcgctcttgaaagactgaag
gtgcttaaatcctacacaggctttggaagcggtcttcaaatagcgttgaaagatatggaa
ctgagaggtgtgggagatgtcctcggtttggaacagcatggaaatgttgtgtccgttggt
ttgaaactgtacaacgaaatcttgaaagagaccatcacgagattcaaagaaagacgaatc
gaaaagaaacactctgtgaacgttgaaatagaaaatcccccgggcagatttttcataccg
gaagattacgtgcagaatcctgtagagaggttgagactttacagaagactcgcatcctct
cttgatgaggaagatctcgaggaaatactggaggaaatgagggatagattcggagaacca
cccgaagaagtgaagttactcgttgattacttcagattgaggatcagagcttcgaagctg
ggagtaaagaagatcagattcgatcactcaatggtggaaatctttccaaacagagactcg
ccgtttttgaatcatccgagatacaatagacggtcgggaagtgttgttctctacaccagg
gagaatccggtggagtttctcatggacttactgaaaaaatga
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