Tatumella ptyseos: NCTC11468_00189
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Entry
NCTC11468_00189 CDS
T05493
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tpty
Tatumella ptyseos
Pathway
tpty03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11468_00189 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpty03021
]
NCTC11468_00189 (rpoB)
03400 DNA repair and recombination proteins [BR:
tpty03400
]
NCTC11468_00189 (rpoB)
Enzymes [BR:
tpty01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11468_00189 (rpoB)
Transcription machinery [BR:
tpty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11468_00189 (rpoB)
DNA repair and recombination proteins [BR:
tpty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11468_00189 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
SQK71806
UniProt:
A0A2X5NFC1
LinkDB
All DBs
Position
1:148196..152224
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AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIIDLFFDKVVYEIRDNKLQMA
LVPERLRGETASFDIESNGTVYVEKGRRITARHIRQLEKDNVQHIEVPVEYIAGKVVARD
YIDESTGELIVAANMELSMDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGAGIL
SHDDIIQVMKKLIDIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDSQVT
DEIHYLSAIEEGNFVIAQANTNLDDDGRFVDDLVTCRNKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYAGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFTRIYTVLTTGGVEAEKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDE
LKREFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQDVAR
LREFIQRAYDLGTDVRQKVDLNTFSDDQVLRLAENLKKGMPIATPVFDGAKESEIKELLT
LGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggcaaacgtccgcaa
gtactggatgtgccttatctcctatctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggccaatacggtctggaagcagcattccgttccgttttccctatccag
agctacagtggtaactctgagctgcaatatgtcagctaccgtctgggtgagcctgtcttt
gatgttaaagagtgtcagatccgtggtgtgacattttcagcaccactgcgcgtaaaatta
cgcctggtcatctacgagcgcgaagcgccggaagggaccgtcaaagacattaaagaacaa
gaagtttacatgggcgaaattccgctcatgactgataacggtacctttgtcatcaatggt
actgagcgtgttatcgtttctcagttacaccgtagcccgggcgtattctttgatagcgat
aaaggtaaaacgcattcttccggtaaggtactgtataacgcacgtatcatcccttaccgt
ggctcatggctggacttcgagttcgatcctaaagacaacctgtttgtccgtattgaccgt
cgtcgtaaactgcctgcgaccattattctgcgcgcactgaattacaccactgaacaaatc
atcgacctgttctttgataaagtggtctatgaaattcgtgacaacaaactgcagatggcg
ttggttcctgagcgtctgcgcggcgaaactgcctcttttgacatcgagtcaaatggcaca
gtttatgtcgaaaaaggccgccgtattactgcccgtcatatccgccagctggaaaaagat
aatgtccagcacatcgaagttccggttgaatatattgccggtaaagtcgttgcgcgtgat
tatattgatgagagcaccggtgagcttatcgttgctgcgaacatggaactgtccatggat
ctgctggctaaactgagccagtctggtcataagcgcatcgaaacgctgttcacaaacgat
ctggaccacggtccttatatctctgaaaccctgcgtgtggatccgaccagcgaccgcctg
agtgcactggttgaaatctaccgtatgatgcgtcctggtgagccaccaacgcgtgaagcg
gcagagaacctgtttgagaacctgttcttctcggaagatcgttatgatctttccgcagtg
ggtcgtatgaagttcaaccgttcattgctgcgagatgaaatcgaaggtgcaggtatcctg
agccacgacgatatcatccaggtaatgaaaaaactgatcgatatccgtaacggtatcggt
gaagtggatgacatcgaccacctgggtaaccgtcgtatccgttctgtcggtgagatggct
gagaaccagttccgtgtcggtctggtacgtgttgagcgtgcggtgaaagagcgtctgtcc
ctgggtgatctggataccctgatgcctcaggacatgatcaacgctaagccgatttcagct
gccgttaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgaaattacgcacaaacgtcgtatttctgcactgggcccgggcggtctgacccgt
gaacgcgcaggctttgaagttcgagacgtacacccgactcactacggtcgtgtttgtcct
atcgaaacgcctgaaggtccgaacatcggtcttatcaactcactgtctgtgtatgcgcag
actaacgaatatggcttcctcgaaacgccataccgtcgtgtggttgatagccaggtgact
gacgaaattcattacctgtctgcgattgaagaaggcaacttcgttattgctcaggcgaac
accaacctcgacgacgatggtcgtttcgtggatgacctggtgacctgtcgtaacaagggt
gaatcgagcctgttcagccgtgaccaggttgactacatggacgtttcgacccagcaggtt
gtttctgtcggtgcgtcactgatcccattcctggaacacgatgatgctaaccgtgcattg
atgggtgcaaacatgcaacgtcaggcggttcctactctgcgtgctgataagccgttagta
ggtaccggtatggaacgcgcggtcgcagtcgactccggtgttactgcagtggctaagcgt
ggcggtaccgttcagtacgtcgatgcctcccgtatcgttatcaaagttaacgaagacgag
atgtatgccggtgaagcgggtatcgatatctataacctgaccaaatacacccgttctaac
cagaacacgtgtatcaaccagatgccatgtgtcaatctgggtgagccgattgaacgtggt
gatgtactggcagatggcccgtctaccgatttaggtgaactggctctgggtcagaacatg
cgcgtggcattcatgccatggaatggttataacttcgaagactccatcctcgtttctgag
cgtgttgtccaggaagaccgtttcacgactatccatattcaggaactggcttgtgtgtcc
cgtgacaccaaactggggccggaagagatcactgcggatatccctaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtttatatcggtgctgaagtgaccggtggc
gatattctggtcggtaaagtcacgcctaaaggcgagacccagctgacgccggaagaaaaa
ctgctgcgtgctatcttcggtgagaaagcgtctgacgttaaagattcttctctgcgcgta
ccaaacggtgtttccggtacggtcatcgatgttcaggtcttcacccgtgatggtgttgaa
aaagacaaacgtgcgctcgaaattgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatccttgaagccggcctgtttacccgtatctataccgttctgacg
accggtggtgttgaagctgagaagctggacaaactgccacgtgagcgctggctggaactg
ggtctgactgatgaagaaaaacagaatcagttagagcagctggctgaacagtatgacgaa
ctgaagcgcgagtttgagaagaagcttgaagctaagcgccgcaaaatcacccagggcgat
gatctggcaccaggtgtgctgaaaatcgttaaggtttatctggccgttaaacgtcagatc
cagcctggtgataaaatggcaggtcgtcacgggaacaaaggtgttatctctaagatcaac
ccgatcgaagatatgccttacgatgaaaacgggactcctgttgatatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtatcggcgataagatcaatgccatgctgaagcagcaacaggatgttgcccga
ctgcgtgagttcattcagcgcgcttatgacttaggcactgatgttcgccagaaagtcgac
ctgaacactttctctgatgaccaggtattgcgtctggcagagaacctgaagaaagggatg
ccaattgcgaccccggtcttcgacggtgctaaagaaagtgaaatcaaggaactgctgact
ttagggggtattcctacttccggtcagatcaccctgtttgatggtcgtaccggtgagcag
tttgagcgtcaggtaaccgtaggttacatgtacatgctgaaactgaaccacctggtggat
gacaaaatgcatgcgcgttctaccggttcttacagccttgttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgtttcggggagatggaagtgtgggcactggaagca
tacggtgcagcatacaccctgcaggaaatgctgacggtgaaatctgatgacgtgaacggc
cgtacgaagatgtataaaaacatcgtcgatggtaaccatcagatggaaccaggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gacgagtaa
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