Tatumella ptyseos: NCTC11468_00243
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Entry
NCTC11468_00243 CDS
T05493
Symbol
csrD
Name
(GenBank) Regulator of CsrB and CsrC decay CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
tpty
Tatumella ptyseos
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpty03019
]
NCTC11468_00243 (csrD)
Messenger RNA biogenesis [BR:
tpty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC11468_00243 (csrD)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Collectrin
Motif
Other DBs
NCBI-ProteinID:
SQK71937
UniProt:
A0A2X5NFQ4
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All DBs
Position
1:206710..208620
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AA seq
636 aa
AA seq
DB search
MRSTTRLTALITFVSMLAMLLMLFGCIASFLWLNKQRIEHQFNTLATSIDQALFVRPPSE
MTRWLRGVMPVVNIERLELYDGKHAVINLSRHEFPLVEATPNHFYHFSTGLLHHPSLTLR
ITILNPVQTWLVSFAGISTFIVMGVVVLVMSALLLLLHFWLDRQSSGMGLLEARSQRILL
GDRTKALTPEITEWPPKVSQAIDTLLQEIEQAGVQRVRIDTLIREFASLDTESGLNNRLF
FNSRFATLLDPQEEAAEHGCIMMLRFTGTEGVSAANEAERNNQRLFEFVHSVSALISCYP
GALLARYFQNDFTVLLPHRSLKEAEGIAAKLVTAAEASAPFGVYNKDDFVHIAISDWQRG
QSMAQVMERLDLAMRRATLLGSNNWAIEESPHLKPDRGSVRWRTLLESTYQRGGPLLLQK
AVTDWQGQIHHRVLQGRIKDKDQSILPAEYMPVVCDIGMAALWDRQFLTRGFLLAAESGT
GDWSFPLTIDALLQRPFAKWLYKMLLQIPRSKRKNFLFELAEADVCQHIDRLFTVLHDLR
AFGCRIIISQAGQTLVSSAYLSRIKAEVIKLDSGLVRNIERCPENQLLVSSLVESCHAVS
TLVFATGVRTREEWMMLINLGVSGGQGDFIAPPLPA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcaacgacacggcttaccgcactcattacttttgtcagtatgctggcgatgtta
ttgatgttattcggctgtatcgccagttttctctggctcaataaacagcgtattgagcat
cagtttaacacgcttgcgacttctattgatcaggcgctttttgttcgccccccttcggaa
atgacacgatggctgcgtggagtgatgccggttgtcaatattgagcgacttgaattatat
gacggaaaacatgctgtcattaatctttcccgtcatgagttcccactggttgaagctacc
cccaaccatttttaccatttttccaccgggttactgcaccatccttccctgacgttacgt
attactatcctgaaccctgtccagacctggcttgtgtcgtttgccggcatttctactttt
atcgtcatgggggtcgttgtactggtgatgtctgcgctcttattgttgctgcatttctgg
ctggatcggcagtcttcagggatggggttactggaagccagaagtcagcggattttactg
ggtgatcgcactaaagcattaactcctgagataactgagtggccgccgaaagtgagtcag
gcgattgatacacttttacaggagatagaacaggccggggttcaacgtgtgcggatagat
accctgatccgtgaatttgcgtcgctggataccgaaagcgggcttaataaccgccttttc
tttaacagtcgtttcgccactttacttgatccgcaggaagaggccgcagagcatggctgt
attatgatgcttcgcttcaccgggacagagggggtttcggcagcgaatgaagcagagcga
aataatcagcggctgtttgagtttgttcatagtgtgtcagcgctgatcagttgttacccc
ggggcattgctggcccggtattttcagaatgatttcaccgtgttattgcctcatcgatcg
ctcaaagaagccgaggggatcgcggcaaaactggtgactgccgcggaagcctctgcaccg
ttcggagtctataataaagacgattttgtgcatattgcgatcagtgactggcagcgtggc
cagagtatggcacaggtgatggagcggctggatctggcaatgcgcagggcgacgcttctt
ggcagcaataactgggcaatagaagaaagccctcacctgaagccggaccgtggcagtgtt
cgctggcggaccttactggaaagtacctatcagcgaggtggcccgttactcctgcaaaaa
gcagtcactgactggcaagggcagatacatcaccgggtattacaggggcgtattaaggat
aaggatcaatccattctgcccgcagaatatatgccagtggtctgtgatataggaatggct
gcactctgggatcgccagtttctgacccgggggtttttgctggcagcagaaagcgggacg
ggcgactggtcgtttccgttaacgatagatgccttgttacaacgcccttttgcgaaatgg
ctctacaaaatgctattacagatacctcgctctaaaagaaaaaattttttatttgaactt
gctgaggcagatgtgtgtcaacacatcgaccggttatttaccgtattgcatgacctgcgg
gccttcggttgccggattattatcagtcaggcgggtcagaccctggtcagtagtgcctat
ctgtcacggattaaagcagaggtcatcaaactggatagcggactggtacgcaatattgaa
cgctgtccggagaatcaattactggtgagtagcctggttgagagttgtcatgcggtatca
acgttagtattcgctaccggtgtcagaacgcgtgaagagtggatgatgctgattaattta
ggtgttagcggtggacaaggcgattttattgcgccacccttaccggcataa
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