Tatumella ptyseos: NCTC11468_00334
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Entry
NCTC11468_00334 CDS
T05493
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpty
Tatumella ptyseos
Pathway
tpty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11468_00334 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpty03019
]
NCTC11468_00334 (deaD)
03009 Ribosome biogenesis [BR:
tpty03009
]
NCTC11468_00334 (deaD)
Enzymes [BR:
tpty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11468_00334 (deaD)
Messenger RNA biogenesis [BR:
tpty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11468_00334 (deaD)
Ribosome biogenesis [BR:
tpty03009
]
Prokaryotic type
rRNA helicases
NCTC11468_00334 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
DUF5798
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
SQK72086
UniProt:
A0A2X5NG35
LinkDB
All DBs
Position
1:296787..298667
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AA seq
626 aa
AA seq
DB search
MTDIQTTFSDLGLNESILSALNDMGYVKPSPIQAACIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPALKAPQILVLAPTRELAVQVGEACNEFSKHMRGVNVLALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTAYGRKSDALVRFLE
AEDFDAAIIFVRTKNATLEVAETLERNGYSSAALNGDMNQSLREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLSTRRQAKFAERVQQQLESSDLDQYRALLEKLSPQEDLDMETL
AAALLKMAQGERPLIVPADVPRPARREFRDRDERSDRGGRDDRRGNRERDGGDRPRRERR
DVGDMQMYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEI
LQHFTKTRILNKPMNMQLIGDVQPQSREPRRGGGRDGGREGGREGGGRRFSDRREGGGRG
SFSGNREGRGPRREDGAAPAPRRREY
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccactttttccgatctgggccttaacgaatccatcctgtctgcg
ctgaatgacatgggatacgttaaaccatcaccaatccaggctgcctgtattccacacctg
cttgcaggtcgtgatgtcctgggtatggctcagaccggtagtggtaaaacagcggcattt
tctctgccattgctgaacaacattgatcctgccctgaaagcacctcagatcctggtgctg
gcgccaacgcgtgagctggcggtacaggtaggcgaagcctgtaatgaattctctaaacac
atgcgcggtgtaaacgtcctggccctgtacggtggtcagcgttacgacgtccagctgcgc
gctctgcgtcagggaccacagattgttgtgggtacacctggccgtctgctggatcacctg
aaacgcggtaccctggatctgtccaacctgcgtggtctggtactggatgaagctgacgaa
atgctgcgcatgggctttatcgaagacgtagaaactattatggcccagatccctgaaggc
catcagactgcgctgttctcggcgactatgcctgaagcgattcgtcgcatcacccgtcgc
tttatgaaagatccgcaggaagtgcgtatccagtcaagcgtgactacgcgtcctgacatc
agccagtcttactggactgcttatggccgtaagagtgatgcgctggtgcgtttcctggaa
gctgaagattttgatgctgcaatcatcttcgttcgtaccaaaaatgcaacgctggaagtg
gctgaaacgctggagcgtaacggctacagcagtgctgccctgaacggtgacatgaaccag
tcactgcgtgagcagactctggagcgcctgaaagatggtcgcctggatatcctgattgca
accgatgttgctgcacgtggtctggatgttgaacgtatcagcctggtcgtgaactacgac
atcccgctggatgctgaatcttacgttcaccgtatcggccgtaccggtcgtgcgggtcgt
gcgggtcgcgctcttctgttcgtagagaaccgtgagcgtcgtctgctgcgtaacattgaa
cgcaccatgaagctgactatccctgaggtagaactgccgaatgcggaactgctgagtacc
cgtcgtcaggcgaaatttgctgaacgtgttcagcagcagctggaaagcagcgatctggat
cagtaccgtgcactgctggagaaattatctcctcaggaagatctggatatggaaactctg
gccgcagctctgctgaaaatggctcagggtgaacgtccgctgatcgttcctgctgatgtc
cctcgtcctgcgcgtcgtgaattccgtgaccgtgatgagcgtagtgatcgtggtggtcgt
gacgaccgtcgtggtaaccgtgaacgtgacggtggtgaccgtccgcgtcgtgaacgccgt
gatgtgggtgatatgcagatgtaccgcattgaagttggccgtgatgatggtgttgaagta
cgtcacattgttggtgctattgccaacgaaggtgatatcagcagccgttacattggtaac
atcaaactgttcggtactcactcaacgattgagttaccgaaaggtatgccgggtgaaatc
ctgcagcacttcaccaagacgcgtattctgaacaaaccgatgaatatgcaactgattggt
gatgtacagccacagtcccgtgaaccacgtcgtggtggcggtcgtgatggtggccgtgaa
ggtggtcgtgaaggcggcggacgtcgtttctctgaccgtcgcgaaggtggtggccgtggt
tctttcagcggtaaccgtgaaggccgtggcccgcgtcgtgaagacggtgcagcaccggct
ccgcgtcgtcgcgagtactaa
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