Tatumella ptyseos: NCTC11468_01521
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Entry
NCTC11468_01521 CDS
T05493
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpty
Tatumella ptyseos
Pathway
tpty03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11468_01521 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpty03400
]
NCTC11468_01521 (mfd)
Enzymes [BR:
tpty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11468_01521 (mfd)
DNA repair and recombination proteins [BR:
tpty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC11468_01521 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SQK74382
UniProt:
A0A2X5PCB2
LinkDB
All DBs
Position
1:complement(1381251..1384694)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSDKTSYSLPVNAGDHRQLGLLTGAALAAECADIAERHNGPLLLITNDMQSALHLRGEIR
QFTTLPVSHLPDWETLPYDSFSPHQDIISERLSTLYQLPAMEKGVLILPVNTLMQRVCPH
SFLQGYALMMSRGQKVSRDLLREQLDQAGYRHVDQVMEHGEFAIRGALLDLFPMGSEQPY
RIDFFDDEIDSLRLFDTDSQRTLEEVDAINLLPAHEFPTDKASIELFRTQWREHFDVLRD
AGHIYQQVSKGTLPVGIEYWQPLFFSSPLLPLFDYLPASTLLLSCGDLQAGSERFWQDTK
QRYENRRVDPLRPLLEPQTLWLPPDTLMTALKQWPLIRLASGEVKDKAANTNLSYSPLPD
ISLQAQAREPLGALRNFIESFDGAIIFSVESQGRRERLQEQLSKIKIRPTDIGLLNDASA
PGYYLMTGPAERGFIDNLRQRALICETDLLGERVVHRRQDNRKTINPDVLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGVKGEYLMLTYAGNASLYVPVSSLHLISRYAGGADENA
PLHKLGSDSWSRARQKAAEKVRDVAAELLDIYAQRAAKTGYAFRHQREMYQKFCEGFPYE
TTPDQGQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFADWPVRIEMLSRFRTTKEQNAVLQEASEGKVDILIGTHKLLMSDLKW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDDLVVREAILREVLRGGQVYYLYNDVENISKAAERLATLVPEARVSV
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETLGFTLYMELLENAVEALKEGREPSLEDLTSQQTEVELRLPALLPEEYIPDV
NTRLSFYKRIASAEHEDEIQELKVELIDRFGLLPDPARYLLDIARLRQQAKALGIRKIEA
GEKGGYIEFAEKNHVDPGWLIGLLQKDPQQWKLEGPVKLRFTRDLQERKVRIEWVAELLV
QMQQHRL
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataagacaagttattcgctgcccgtcaatgccggcgaccaccgtcagctgggg
ctgttaacaggcgcagctttggccgcagagtgtgcagatattgcagaacgccataacggg
ccactgttactgatcaccaatgacatgcagtctgccctgcatctgcggggggaaatccgt
cagttcacgaccctgcccgtgagccacttacctgactgggaaacccttccttacgacagt
ttttctccccatcaggatattatttcggaacgtttatcgacgctctatcagctgcccgcc
atggaaaaaggggtactgatcctgccggtcaataccctgatgcagcgtgtctgcccgcat
tctttcctgcagggatatgccctgatgatgtcccgggggcaaaaggtatcccgtgattta
ttgcgtgagcaacttgaccaggccggttaccggcatgtggaccaggtgatggaacatggt
gagtttgccatccgtggtgccctgctcgacctgttccccatgggcagtgaacagccctac
cggattgatttttttgatgatgaaatcgacagcctgcgtctcttcgatacggacagtcag
cgaaccctggaagaagtggatgccattaatcttctgcctgcccatgagttcccgacggat
aaagcctcaatagagcttttccgtacccaatggcgtgaacattttgatgtgttacgcgat
gccggtcatatctatcagcaggtcagcaaaggcaccctgccggtggggattgaatactgg
caaccgctgttcttctcttcaccactactgcccttgtttgactatctgcctgccagtacc
ctgctgttgagctgcggtgatcttcaggccggcagtgaacgtttctggcaggatacaaaa
cagcgttatgagaaccgacgggtggatccgttacgcccgctgctggagccacagacgctc
tggctgccgccggatacgctaatgaccgccctgaagcaatggccgttgatccggctggcc
agcggggaagtcaaagacaaggcagctaatacgaacctgagctacagccccctgccggat
atcagcctgcaggctcaggcccgggaaccgctcggtgcgctacgcaacttcatcgagtcg
tttgacggcgccattattttttcggtagagagccagggacgccgtgaacggctccaggag
cagctgagtaaaataaaaatccgtccgacagacatcgggctgctgaacgacgccagcgct
cccggctattatctgatgacgggcccggcagaacgcgggtttatcgataatctgcggcag
cgtgcactgatctgtgaaaccgacttactgggcgaacgggtcgttcaccgccgccaggac
aaccgcaaaaccattaatccggatgtgctgatccgtaacctggccgaactgcatcccggg
cagccggtggttcacctggaacacggtgttggccgttacgccggaatgacgaccctggaa
gccggcggtgtcaaaggtgagtatctgatgctgacctatgccggcaatgccagcctgtat
gtgccggtctcgtctttacacctgatcagccgttatgccggtggtgccgatgaaaatgcc
ccgctgcataaactgggcagtgacagctggagccgcgcccgtcagaaagcggcggaaaaa
gtccgcgatgtggccgcagaattgctggatatctatgcccagcgggcggcaaaaaccggt
tatgcgttcagacatcagcgcgagatgtatcagaagttctgtgagggcttcccttatgaa
accactccggatcagggacaagccattaatgctgtgctgagtgatatgtgccagccgctg
gcgatggacaggctggtctgcggggatgtcggtttcggtaaaaccgaagtcgccatgcgc
gccgccttcctggcagtagaaaataacaagcaggtcgcggtgctggtaccgacgactctg
ctggcacaacagcacttcgataatttccgtgaccgtttcgctgactggccggtgcggatc
gagatgctttcacgcttccgtaccaccaaagagcagaatgcggttctgcaggaagccagc
gaaggtaaagtcgatattctgatcggtacccacaaactgctgatgagtgatctgaaatgg
catgatctgggattactgattgtcgatgaagaacaccgtttcggggtccggcacaaagag
cgtattaaggcgatgcgggcagatgtggatattcttacgctgaccgccaccccgatcccg
cggacactgaacatggcgatgagcggtatgcgtgatctgtcgattattgcgacaccaccg
gcccgtcgtcttgcggttaaaacctttgtccgtgaatatgatgacctggtggtccgtgag
gctatcctgcgtgaagtgctgcgcggaggtcaggtgtattacctgtataacgatgtcgaa
aacatcagtaaagccgcagaacgcctggccactctggtgccggaagcccgtgtcagcgtc
ggtcacgggcagatgcgtgaacgtgaactggaacgggtgatgaatgatttccatcaccag
cgcttcaatgtcctggtctgcaccaccattatcgaaaccggtatcgatattccgagcgcc
aataccatcattattgaacgcgccgaccacttcggcctggcacagttgcaccagttacgc
ggacgcgtgggacgttcacatcaccaggcctatgcctggttgctgacgccgcatccgaaa
gcgatgaccaccgatgcgaagaagcgtctggaagccattgcctcgctggaagacctggga
gccggatttgcgctggcgacccatgacctggaaatccgcggtgccggtgaattactgggt
gaggatcaaagcggacagatggaaacgctcggctttaccctgtatatggagctgctggaa
aacgccgtcgaagcactgaaagaaggacgtgaaccgtcactggaagatctgaccagtcag
cagacggaagtggaattaaggctgcctgccctgctgccggaggagtatattccggatgtg
aatacccgcttgtctttctacaaacgtatcgccagtgcggagcatgaagacgaaatccag
gagctgaaggtcgaactgattgaccgtttcggactgctaccggacccggcccgctatctg
ctggacattgcacgtctgcgtcagcaagcgaaggcgctggggatccggaaaattgaagcc
ggagagaaaggggggtatatcgagtttgctgagaaaaaccatgtcgaccctggctggctg
attggtctgttacagaaagatccgcagcagtggaagctggaaggtccggtaaaactgcgc
tttacccgtgacctgcaggaacgaaaggtacgtatcgagtgggttgcagaactgttagtg
caaatgcagcagcaccggctgtaa
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integrated database retrieval system
