Tatumella ptyseos: NCTC11468_02000
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Entry
NCTC11468_02000 CDS
T05493
Symbol
topA_2
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tpty
Tatumella ptyseos
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpty03032
]
NCTC11468_02000 (topA_2)
03400 DNA repair and recombination proteins [BR:
tpty03400
]
NCTC11468_02000 (topA_2)
Enzymes [BR:
tpty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC11468_02000 (topA_2)
DNA replication proteins [BR:
tpty03032
]
Prokaryotic type
DNA Topoisomerases
NCTC11468_02000 (topA_2)
DNA repair and recombination proteins [BR:
tpty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC11468_02000 (topA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
SQK75009
UniProt:
A0A2X5NNN5
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All DBs
Position
1:complement(1808989..1811586)
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSGFVVKSSVGHIRDLPTSGSLAKKTAEAGKAKTAKSGK
KDEKAALVNRMGVDPWHNWEANYQILPGKEKVVSELQTLAADADHIYLATDLDREGEAIA
WHLREVIGGDDSRFSRVVFNEITKNAIRQAFEEPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKVARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVDARLNTPQGTELLMRVSH
HHDKAFRPVNKETTRAAVAELEKATYQVTEREDKPTSSKPGAPFITSTLQQAASTRLGYG
VKKTMMLAQRLYESGHITYMRTDSTNLSQDAIEMARGYIDGNFGNNYLPEKANIYTNKDN
SQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMVPAKYDSTTLTVMAGDY
RLKAKGRTLRFDGWTRVMPALRKNDDDLTLPAIEVGDAPALLEVLPAQHFTKPPARFSEA
SLVRELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEANFRELMNY
DFTARMEDNLDQVANDQAEWRAVLDHFFTDFSDQLQKADKDPEEGGMQPNQMVLTSIECP
TCQRHMGIRTATTGVFLGCSGYALPPKERCKQTINLIPENEVLNILEGDDAETNALRARP
RCQKCGTAMDSYLIDEKRKLHVCGNNPSCDGYEIEEGEFRIKGYDGPVVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGDVAPPKEDPVPLPELACEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELQRFSDRLPEKFIYLTQAPAVDPQGNKTLVRFSRKTKQQYV
SSEKDGKATGWSMFFIDGQWQEVKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcactcgttattgttgagtcaccggcaaaggctaaaactattaataaatac
cttggcagtggctttgtcgttaagtccagcgtaggtcatattcgggacctgccgaccagc
gggtctctggctaagaagacggcagaagccggtaaagccaaaacagcaaagtcaggaaaa
aaagacgagaaggccgctctggtgaaccgcatgggtgtcgatccatggcacaactgggaa
gccaactaccagattttaccgggtaaagaaaaagtcgtttctgaattacaaaccctggca
gcggatgctgaccatatttatctcgcaacggatttggaccgcgaaggagaggcgattgcc
tggcacctgcgtgaggtcatcggtggagacgattcgcgcttcagccgcgttgtgtttaac
gagatcactaagaatgcgatccgtcaggcctttgaagagccgggtgaactgaatatcgat
cgtgttaatgcccagcaggcacgtcgctttatggaccgtgtggtcggctacatggtgtcg
cctctgttgtggaaaaaagttgcgcgcggtttatccgccggtcgcgttcagtcagttgct
gtgcggctggtggtagagcgtgagcgtgaaatcaaagcctttgtcccggaagaatattgg
gaagttgatgcccggctgaataccccgcaggggaccgagctgctgatgcgtgtatcgcat
catcacgacaaagccttccgcccggtcaataaagagacgacccgggccgctgtcgctgaa
ctggaaaaagcgacgtatcaggtcacggagcgggaagataaacccaccagcagtaagcct
ggcgcaccttttattacttcaacgttgcaacaggcggcgagtacccgtctgggctacggt
gtaaagaaaaccatgatgctggcgcagcgactctatgagagcggccacatcacgtatatg
cgtacggattccaccaacctgagccaggacgcgattgaaatggcccgggggtatattgac
ggtaatttcggtaataactacctgccggaaaaggccaatatttataccaataaagataat
tctcaggaagcgcacgaagctatccgtccgtctgacgtcaatgtgcttgccgaacaactg
aaagacatggaagcagacgcgcagaagttatatcagctgatctggcgtcagttcgtcgcc
tgtcagatggttccggcgaaatatgactccaccactctgaccgtgatggcgggggattat
cgtctgaaagcgaaaggacgtacgttgcgctttgatggctggacgcgtgtcatgccggca
ttacgcaaaaacgatgatgatctgacgctgccggccattgaggtaggtgatgcacctgcg
ctgctggaagtgctgcctgcacagcattttactaagcctccggcccgtttcagtgaagct
tcgctggtacgtgagcttgaaaaacggggcattggccgtccttcgacctatgcctctatc
atctctaccatccaggaccgtggctatgtccgggtcgaaagccgtcgtttctatgcagaa
aagatgggtgaaattgttaccgatcgtctggaagctaatttccgcgaattgatgaattat
gatttcaccgcacgtatggaagataacctcgatcaggtagcgaatgatcaggccgaatgg
cgtgcggtgctggatcatttcttcacggacttcagtgatcaattgcagaaagcagataag
gatcctgaagaaggaggcatgcaaccgaaccagatggtgctgacctctatcgaatgtccg
acctgtcagcggcatatgggtattcgtaccgccaccaccggggttttcctgggctgttcc
gggtatgcgctgccgccgaaagagcgctgtaagcagaccattaacctgatccctgaaaat
gaagttcttaatattctggaaggggacgatgcggaaactaacgctttgcgtgcgcgtccg
cgctgccaaaaatgcggtaccgctatggacagctacctgatcgatgaaaagcgcaaactg
catgtctgtggtaataacccttcctgtgacgggtatgaaatcgaagagggtgaattccgt
attaaaggctatgacggcccggtggtggaatgcgaaaaatgtggcagcgaaatgcacctg
aaaatgggacgtttcggtaaatacatggcctgtaccaacgacgagtgtaagaatacccgt
aaaatccttcgtaacggcgatgttgctccgccgaaagaagacccggtacctttacctgaa
cttgcctgcgaaaagtctgacgcctattttgtgctgcgtgacggggctgccggtattttc
ctggctgcgaataccttccctaaatcccgcgagacacgagctccgctggtggaagagttg
caacggttcagcgaccgtttgccggagaagtttatttatctgactcaggcaccggccgtt
gatccccaggggaataaaacgctggtccggtttagtcgtaagaccaaacagcaatatgtt
tcttcggaaaaagacggtaaagcgaccggctggtcgatgttctttattgacgggcagtgg
caggaagttaaaaagtag
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