Tatumella ptyseos: NCTC11468_02076
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Entry
NCTC11468_02076 CDS
T05493
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tpty
Tatumella ptyseos
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpty03016
]
NCTC11468_02076 (rnd)
Enzymes [BR:
tpty01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NCTC11468_02076 (rnd)
Transfer RNA biogenesis [BR:
tpty03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC11468_02076 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
SQK75147
UniProt:
A0A2X5NQW6
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All DBs
Position
1:complement(1875721..1876842)
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AA seq
373 aa
AA seq
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MNYQLIHTNQQLAEVCAEARQKTAVALDTEFVRTRTYYPQLGLIQLFDGSLLTLIDPLGI
SDWEPFKALLSDVQVVKYLHAGGEDLEVFLNRFGVLPEPMVDTQILAAFLGFPMSLGFAA
MVSEFEGVTLDKSESRTDWLARPLSERQCEYAAADVWYLLPIAQKLHQQAEEQQVLADAL
SECTMLCERRRDILPADQAWIDISQAWQLRPLQLAALQKLAEWRLNYARRKDMAVNFVVK
EENLWKVARYLPGSLGELHEMGLAGPEIRFHGDTLLRLVAQAKEAPEESYPLPLKNLIEC
PGYKALFKDLKACIKSISDRTGFSQELLASRRQINQVLSEHWKIKPVSRTPELLKGWRGK
LMEQEITAIIDGK
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaactatcaattaattcataccaatcagcaactggcagaggtttgcgctgaagccaga
cagaaaacagccgttgccctggataccgagtttgtccgtacccgaacctattatccgcaa
ctggggttgatccagttatttgacggctcactcctgacgctgattgatcctctcgggatc
agcgactgggaacccttcaaggccctgctgagtgatgttcaggtggttaagtacctgcat
gctggcggagaagatttagaagtcttccttaaccgtttcggtgttctgcctgaacccatg
gtcgatacccaaatcctggcggcattcctgggcttcccgatgtcactgggatttgcagca
atggtctcagagttcgagggtgtgacgctggataaaagtgaatcacgcactgactggctg
gccaggcctctcagtgaacgtcagtgtgagtatgccgcggcagatgtctggtatttgttg
ccgattgcacaaaaactgcatcagcaggctgaagagcaacaggtgctggcagatgcactc
agtgaatgtacgatgttatgcgaaaggcgcagagatatcctgccggcggatcaggcatgg
attgatatcagtcaggcctggcagctccgcccgttacaactggcagcgttgcagaagctc
gcagaatggcgcctgaactatgcacggcgtaaagatatggcggttaacttcgtcgtcaaa
gaggaaaacctctggaaagtcgcacgctatctgccagggtctctgggggagttacacgag
atggggcttgccggaccggaaatacgtttccacggcgacaccttgcttcgtctggtcgct
caggccaaagaggccccggaagagagttatccgttaccgttgaaaaatctgatcgaatgc
cctggctataaagccctgtttaaggacctgaaagcctgcattaaatcgatcagtgaccgc
acgggcttcagtcaggagttactggcttcccgtcggcagatcaatcaggtactgagtgaa
cactggaaaattaaacctgtgagtcgcacgccggagctgctgaaaggctggcggggtaaa
ctgatggaacaggaaattaccgccattatcgacggtaaataa
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