Tatumella ptyseos: NCTC11468_03012
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Entry
NCTC11468_03012 CDS
T05493
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tpty
Tatumella ptyseos
Pathway
tpty03030
DNA replication
tpty03430
Mismatch repair
tpty03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11468_03012 (dnaE)
03430 Mismatch repair
NCTC11468_03012 (dnaE)
03440 Homologous recombination
NCTC11468_03012 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpty03032
]
NCTC11468_03012 (dnaE)
03400 DNA repair and recombination proteins [BR:
tpty03400
]
NCTC11468_03012 (dnaE)
Enzymes [BR:
tpty01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC11468_03012 (dnaE)
DNA replication proteins [BR:
tpty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC11468_03012 (dnaE)
DNA repair and recombination proteins [BR:
tpty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC11468_03012 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
SQK76197
UniProt:
A0A2X5NU04
LinkDB
All DBs
Position
1:complement(2749170..2752652)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLHVHSDYSMIDGLAKTGALVKKAASLNMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFRVASDLMGDELTFLTVLASDNTGYQNLTLLISKAYQRGYGLQGPTIDRDW
LTELSEGLILLSGGRKGDVGRSLLRGNNALVHECLAFYQQYFPDRYYLELHRTGRPDEEE
YLHRAIELAREQDIPVVATNDVCFLSETDFDAHEIRVAIHDGYTLDDPKRPRLYSAQQYL
RTEDEMCELFSDIPEALENSVEIARRCNVTVRLGEYFLPQFPTGDMSTEDFLVASSRQGL
EERLEFLFPDPEVRKAKRPAYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDELGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGEPPIDIASIPLEDKKSFDML
QRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYPFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNKGGYFRELFDLCARTDIKKINRRVMEKLIMSGAFDRLGPHRAALMS
SLNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASVLPWPEQVRLDGERETLGLY
LTGHPITQYLKEIERYAGGTRLKDMHPTDRGKITVAAGLVLAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREIMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPYRSGTIPVHLYYQREDARARLRFGASWRISPSD
RLLNDLRLLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccccgttttattcatctgcacgtacatagcgactattccatgatcgatgga
ctggcgaagacgggggcgttggtcaaaaaagccgcttcactgaatatgccggcgctggcc
atcactgatttcaccaacctttgcgggctggtgaaattttacggttcagcgcatggcgcc
ggtataaaaccgattattggcgcagacttccgcgttgccagtgatcttatgggggatgag
ctcaccttcctgaccgttctggccagtgataataccggttatcagaacctgaccttactg
atctctaaagcctatcaacggggatacggcctgcaggggccgaccattgatcgcgactgg
ctgactgaactgagcgaaggtttgattctgctttccggcgggcgtaaaggcgatgttggc
cgcagcctgctgcgcggtaacaatgcgttagtccacgagtgcctcgcattctatcagcag
tatttccctgaccgttattatctcgagttacatcgcaccggtcgtcctgatgaagaagaa
tatctgcatcgggcgattgaattagcccgggaacaggatattcctgttgttgccacgaat
gatgtctgctttctgagtgaaaccgattttgatgcgcatgaaatccgtgtcgctattcac
gatggttacacactggacgatcctaagcgtccccgcctgtacagcgcgcagcaatatttg
cgtactgaagacgaaatgtgtgaattgttctccgatattcccgaagctctggagaacagt
gtcgagattgctcgtcgctgtaatgtcacggtgcgtctgggggaatattttctgccgcaa
ttcccgacaggggatatgagcacagaggatttcctggttgccagttcccgccaggggctg
gaagagcgactggagttcctgtttccggacccggaagtacgtaaggcaaagcgcccggcc
tatgatgaacgtctgcagatagagctcgacgttatcaaccagatgggattccccggatac
ttcctgatagtgatggagtttatccagtggtccaaggataacggcgtgcctgtggggcct
ggcaggggatccggtgccggctccttagtcgcttatgcactgaaaattacggacctcgat
ccgctggaatttgacctgctgttcgaacgtttcctgaaccccgaacgtgtttctatgcct
gactttgacgtcgatttctgcatggaaaagagggacctggtcatcgatcacgtggccgag
atgtacggccgtgaagccgtttcacagatcatcaccttcggtacgatggcggcgaaagcg
gttattcgtgatgtcggacgtgtattgggacatccttacggttttgttgaccgcatttcc
aaactggtgccgcccgatcccggcatgaccctggaaaaagcgtttgcagcagagccgcag
cttcctgaaatttatgaagccgatgaggaagtgaaagcccttatcgatatggcccgtaag
ctagaaggggtgacccgtaatgccggtaaacatgccggaggcgtggttatcgcaccgacc
aaaattactgactttgccccgctgtactgcgatgagctgggtcagcatccggtcactcag
tttgataaaaatgatgtcgaatatgcagggctggtgaagttcgacttcctcggcctgcgt
accctgactatcattaactgggcattagagatgatcaatgcccggcgggaaaagcaaggc
gaaccgcctatcgatattgcgtctatcccgctggaagataagaaaagtttcgacatgctg
cagcgggcggaaaccaccgcggtattccagcttgaatcccgcggtatgaaagacctgatt
aaacgcctgaagcctgactgtttcgaagatatgatagccctggtggcattgttccgtccg
gggccgttgcagtccggaatggtagataactttatcgaccgtaagcacgggcgtgaggcc
atttcctatccggatattcagtggcaacatgaatcactgcaaccggtgcttgagccgacc
tatggtattatcctctaccaggaacaggttatgcagatagcccaggtgctggcgggttat
accctgggcggggcagatatgctgcgccgtgccatggggaaaaagaaaccggaagagatg
gccaagcagcgctcggtattccgtgatggtgcagagagtatgggcatcgacggcgaactg
tcgatgaagatcttcgacctggtggaaaagttcgccgggtatggatttaacaaatcccac
tccgcagcctacgcactggtctcctatcagaccctgtggctgaaagcacattatccggcg
gaatttatggcggcggtaatgacggctgacatggataataccgagaaagtcgtcgggctg
gtggatgaatgctggcgaatggggctgaaagtattacctccggatatcaactctggcctg
tatccgttccatgtgaatgatgagggcgagatagtttatggtatcggcgcaatcaaaggt
gttggcgaaggtccgatagaagctatccttgaagcaagaaacaagggcggatatttcagg
gagctgtttgatctctgtgccagaaccgatattaaaaaaataaatcgccgggtgatggaa
aaactgataatgtccggggcctttgatcggctaggcccgcaccgggcggcattgatgagt
tcgctgaacgatgcgcttaaagccgcggatcagcatgctaaggctgaggcaatcgggcag
gccgatatgtttggtgtgctcgccgacgaaccggagcaggtagaacagtcgtatgccagt
gtattaccgtggccggaacaggttcgtctggatggtgagcgggagacgctggggctgtat
ctgaccggccatccgatcactcaatatctgaaagaaattgagcgatatgccggggggaca
cgtctgaaagatatgcacccgacagatcgtggtaagataacagtggctgccgggttagtt
ttggcagcacgtgttatggtgaccaagcgtggtaaccgtattggcatctgtactctggat
gaccgttcagggcgtcttgaggttatgctgtttactgatgcccttgataaataccagcat
ttgctggaaaaagatcgtattctgatcgtcagcggacaggtcagctttgatgatttcagt
ggcgggcttaaaatgaccgccagggaaattatggatatcgatgaagcgcgtgaaaagtat
gcacgcggtcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccgt
ctccgtcagtccctggaaccgtaccgttcggggaccattccggtacatctctactatcag
agagaggatgctcgggcaaggttgcgctttggtgcatcgtggcgaatctcgcccagtgat
cgtctgctcaacgatttgcgtttattgatagggtcggagcaggtggaactggagtttgac
taa
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