Tsukamurella pulmonis: TPB0596_05640
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Entry
TPB0596_05640 CDS
T08311
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpul
Tsukamurella pulmonis
Brite
KEGG Orthology (KO) [BR:
tpul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpul03016
]
TPB0596_05640
Enzymes [BR:
tpul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TPB0596_05640
Transfer RNA biogenesis [BR:
tpul03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TPB0596_05640
Prokaryotic type
tRNA splicing ligases
TPB0596_05640
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDD80801
LinkDB
All DBs
Position
591363..592529
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AA seq
388 aa
AA seq
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MEKISKTLVSWASIVDDKTREQAITTARMPFIYPHIALMPDAHLGKGATVGSVIPSLGAV
IPAAVGVDIGCGMIAVRTQFTKDDLPEDRSTVREAIERAIPLSPGRYNKKVVATAEPRIA
ELEALAERAEFDPAKYAGNWKLQLGTLGGGNHFIEISLDEDDTVWAFLHSGSRGVGNKIA
QHHIAVATRLCKQWWIELPDPDLAYLVEGTPEFRRYIAELKWAQHFALLNREEMMDRVIR
QLGEWVGTPVAEAERINCHHNFTQREKHFGKEVWVSRKGAIEATEGKLGLIPGSMGTASY
IVEGKGFAPSLNSSPHGAGREYSRSAARKAFTHEQLQEAMAGIEFRDSPDFIDEIPQAYK
PIDRVMADADDLVTVRAVLRQIVNVKGQ
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcagcaagaccctggtctcgtgggcgtccatcgtggacgacaagacccgc
gagcaggcgatcaccacggcgagaatgccgttcatctacccgcacatcgcgttgatgcca
gacgcgcacctcggcaagggggcgaccgtcggctcggtcatcccgagcctcggcgccgtc
atccccgcggccgtcggcgtcgacatcggctgcggcatgatcgcggtgcgtacacagttc
acgaaggatgatctgccggaagatcgttcgacggtccgcgaggccatcgagcgggcgatc
ccgctctcgcccggccgctacaacaagaaggtcgtggcgacggcggagccgaggatcgcg
gagctggaggcgctcgccgagcgggcggagttcgacccagcgaagtacgccgggaactgg
aagctgcagctcggcaccctcggcggcggtaaccacttcatcgagatcagtctcgacgag
gacgacaccgtctgggccttcctgcactccggctcccgtggcgtgggcaacaagatcgcc
cagcaccacatcgccgttgcgacccgcctgtgcaagcagtggtggatcgaactgccggat
ccggacctggcctacctcgtggagggcacgcccgagttccgtcggtacatcgccgagctg
aagtgggcgcagcacttcgcgctgctcaaccgtgaggagatgatggaccgggtgatcagg
cagctcggcgagtgggtgggaacgcccgtcgccgaggcggagcggatcaactgccaccac
aacttcacccagcgcgagaagcacttcggcaaggaggtgtgggtgtcgaggaagggcgcg
atcgaggccaccgagggcaagctcggcctcatcccgggctcgatgggcaccgcgtcctac
atcgtcgagggcaaggggttcgccccgtcgctcaacagctcgccgcacggcgcgggcagg
gagtactcccggtccgcggcgcggaaggccttcacacacgagcagctgcaggaggccatg
gcgggcatcgagttccgcgacagtcccgacttcatcgacgagatcccgcaggcctacaag
ccgatcgaccgggtcatggccgacgccgacgacctggtgacggtgcgtgccgtcctgcgg
cagatcgtcaacgtcaaggggcagtag
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