Tsukamurella pulmonis: TPB0596_07590
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Entry
TPB0596_07590 CDS
T08311
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpul
Tsukamurella pulmonis
Pathway
tpul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPB0596_07590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpul03021
]
TPB0596_07590 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpul03400
]
TPB0596_07590 (rpoC)
Enzymes [BR:
tpul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPB0596_07590 (rpoC)
Transcription machinery [BR:
tpul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPB0596_07590 (rpoC)
DNA repair and recombination proteins [BR:
tpul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPB0596_07590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Caldesmon
TarH
Motif
Other DBs
NCBI-ProteinID:
BDD80996
LinkDB
All DBs
Position
772510..776466
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDVNFFDELKIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITEVDEEQRHNEQSTLEAEITSEKKVLADQRDVDLENRAKKLEDD
LAVLEAEGAKADQRRKVKDGGEREMRQIRDRAQRAIDELDEIWTTFVKLAPKDMIVDEKL
YRELQDRYGEYFKGAMGAEAIKKLIENFDIDAEAEILRETIRSGKGQKKLRALKRLKVVA
AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTTKKDEAKGAYT
PAAKDQPETGVYSSPAEAIMAVDLGDLSIQAPIKVRLEHQRPSAEVEAELFDGAWTRGQA
WTAETTLGRVLFNELLPADYPFVDEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPSKKGILDHYEERADGIERKYARGALTSGERRDALVEIWKQA
TEEVGKAIDDFYPADNPIIMIPKSGATGNLTQVRNLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGIVVPL
AEVQADGSLIRDAHVETSAYARTIAEDAVAKDGTVVVERGHDLGDPQIEALLEAGIAEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVTELFEARVPKGKAPIAEVSGRIRLEDDDRFYTITITPDDGSEEVVYDKIS
KRQRLRVFKHEDGTERLLADGDHVQVGQQLLEGAADPHEVLRVMGPRQVQVHLVNEVQEV
YRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERSEFESENRRVVAEGGEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINTRSDKLVGLKENVIIGKLIPAG
TGINKYRNIQVQPTEEARAAAYSVPTFDDQYYGPEGAFGAPSGAAVPLDDYGFSDGYR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgttaacttcttcgacgaactgaagatcggtctggcgaccgccgatgacatc
cgtaactggagctacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgcgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctgggctacctgctggacctg
gcgcccaaggatctcgagaagatcatctacttcgccgcctacgtgatcacggaggtcgac
gaggagcagcgccacaacgagcagtccacgctcgaggccgagatcacctccgagaagaag
gtgctcgccgaccagcgcgacgtggacctggagaaccgggccaagaagctcgaggacgac
ctcgccgtgctcgaggccgagggcgccaaggccgaccagcgccgcaaggtcaaggacggc
ggcgagcgggagatgcggcagatccgcgaccgcgcgcagcgtgccatcgacgagctcgac
gagatctggacgaccttcgtcaagctcgctccgaaggacatgatcgtcgacgagaagctc
taccgtgagctgcaggatcgttacggcgagtacttcaagggcgccatgggtgccgaggcg
atcaagaagctcatcgagaacttcgacatcgacgccgaggccgagatcctgcgcgagacg
atccgctcgggcaagggccagaagaagctgcgcgcgctcaagcgactcaaggtcgtcgcg
gcgttccagcagtcgggcaactcgccgctgggcatggtcctcgacgcggtgccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgccacgtccgacctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgcccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtgatcgtcgtgggcccgcagctcaagctgcaccag
tgcggcctgccgaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtggatctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcggcagcgc
ccgcaggtgtgggacgtcctcgaagaggtcatcgccgagcaccccgtgctgctcaaccgt
gctcccacgctgcaccgtctgggcatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgccggcgtcgggtcgcccgctcgccatgccccgtctggac
atggtgaccggtctgtaccacctgaccacgaagaaggacgaggcgaagggcgcgtacacg
ccggccgccaaggatcagccggagaccggcgtctactcgtcgccggccgaggccatcatg
gccgtcgacctgggcgacctgtcgatccaggcgccgatcaaggtgcgcctggagcaccag
cgcccgtcggccgaggtcgaggcggagctcttcgacggtgcgtggacccgcggtcaggcc
tggacggccgagaccaccctgggccgcgtgctgttcaacgagctgctccccgcggactac
ccgttcgtggacgagcagatgccgaagaagcgtcaggccgtgatcatcaacgatctggcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggcgtgacggtctcgatgtccgacgtgctcgttccgccgagc
aagaagggcatcctcgatcactacgaggagcgcgccgacggcatcgagcgcaagtacgcc
cgcggtgccctcacctcgggtgagcgtcgcgacgcgctggtggagatctggaagcaggcg
acggaggaggtcggtaaggcgatcgacgacttctaccccgccgacaacccgatcatcatg
atcccgaagtcgggcgccaccggtaacctgacgcaggtccgcaacctggccggcatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgacggtgctggagtacttcatcaacacccacggtgctcgtaagggtctggcc
gataccgcgctgcgcaccgccgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtccgcgagaccgactgcggcaccagccgtggcatcgtcgtgccgctg
gccgaggtgcaggcggacggttcgctgatccgcgacgcgcacgtcgagacctcggcgtac
gcccgcacgatcgccgaggacgcggtggccaaggacggcaccgtcgtggtcgagcgcggt
cacgacctgggcgacccccagatcgaggcgctgctcgaggccggcatcgcggaggtgaag
gtgcgctccgtgctcacctgcaccaccggcaccggtgtctgcgccacctgctacggccgc
tcgatggcgaccggcaagctcgtcgacatcggcgaggccgtcggtatcgtcgccgcgcag
tcgatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggcgtcggt
gacgacatcaccggcggtctgccgcgagtcaccgagctgttcgaggcccgtgtccccaag
ggcaaggccccgatcgccgaggtctccggccgcatccgcctggaggacgacgaccggttc
tacacgatcaccatcacgccggacgacggcagcgaagaggtcgtgtacgacaagatcagc
aagcgccagcgcctccgcgtgttcaagcacgaggacggcaccgagcgcctgctggccgac
ggtgaccacgtgcaggtgggccagcagctcctcgagggcgctgccgatccgcacgaggtg
ctgcgcgtcatgggcccgcgtcaggtgcaggtgcacctggtcaacgaggtccaggaggtg
taccggtcgcagggtgtgtcgatccacgacaagcacatcgagacgatcgtccgtcagatg
ctgcgtcgcgtgacgatcatcgactcgggttccacggagttcctgcccggctcgctcacc
gagcgttccgagttcgagtccgagaaccgtcgcgtcgtggccgagggcggcgagcccgcg
gccggccggccggtgctcatgggcatcaccaaggcctcgctcgcgaccgactcgtggctg
tcggcggcctccttccaggagaccacccgcgtgctcacggacgccgcgatcaacacccgc
tccgacaagctggtgggcctcaaggagaacgtcatcatcggtaagctcatcccggccggt
acgggcatcaacaagtaccggaacatccaggtgcagccgaccgaggaggcccgcgcggcc
gcgtactcggtgccgaccttcgacgaccagtactacggcccggagggtgcgttcggcgcc
ccgtccggcgccgcggtgccgctcgacgactacggcttctccgacggctaccggtaa
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