Tsukamurella pulmonis: TPB0596_32770
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Entry
TPB0596_32770 CDS
T08311
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpul
Tsukamurella pulmonis
Pathway
tpul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPB0596_32770 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpul03019
]
TPB0596_32770 (deaD)
03009 Ribosome biogenesis [BR:
tpul03009
]
TPB0596_32770 (deaD)
Enzymes [BR:
tpul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TPB0596_32770 (deaD)
Messenger RNA biogenesis [BR:
tpul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TPB0596_32770 (deaD)
Ribosome biogenesis [BR:
tpul03009
]
Prokaryotic type
rRNA helicases
TPB0596_32770 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDD83514
LinkDB
All DBs
Position
complement(3285521..3287320)
Genome browser
AA seq
599 aa
AA seq
DB search
MSDEFGAERTAPAAVVDDAQADEPVTFLDLGIDERVLRALAEVGYESPSPIQAATIPPLL
SGSDVVGLAQTGTGKTAAFAVPVLSKIDGDSRKPQALVLAPTRELALQVSEAFGKYAVHM
PNITVLPIYGGQSYGVQLSGLRRGAQIIVGTPGRVIDHLAKGTLDLSNLEFLVLDEADEM
LTMGFQEDVERILADTPEFKQVALFSATMPPAIRKISKKYLHDPVEVTVKAKTATASNIT
QRYLQVAHQRKLDALTRLLEVEEFDGMIIFVRTKSATEELAEKLRARGHAAAAINGDIVQ
AQRERTIGQLKDGKIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGR
KGDALLFVTPRERHLLRAIEKATRQPLTEIGLPSVEDVNAHRVEKFGESITENLSNDHLQ
MFRRLIEDYVGANDVPLVDVAAALALQSRDGASFLLKPDPPERERNARDRKDRDFGDRDA
RPGRGRDRDRDREPSTHRKTGRPMVPYRIAVGKRQHATPSQIVGAIANEGGLRRSDFGHI
SIRPDHSIVELPDDLDRDVFDALERTRISGQLINLERDPGAPSGRPASGKQRFRAGRKR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgaattcggtgctgagcgcaccgcccccgccgccgtcgtcgatgacgcgcag
gctgatgaacccgtgaccttcctcgacctcggaatcgatgagcgcgtgctgcgtgctctc
gccgaggtcgggtacgagagcccgtcgccgatccaggccgcgaccatcccgccactgctc
tccggcagcgacgtcgtcggcctcgcgcagaccggtaccggcaagaccgccgcgttcgcc
gtgccggtgctctccaagatcgacggcgacagccgtaagccgcaggcgctggtgctcgcg
cccacgcgcgagctggccctgcaggtctccgaggccttcggcaagtacgccgtccacatg
cccaacatcacggtgctgccgatctacggcggccagagctacggcgtgcagctgagcggc
ctgcgccgcggcgcgcagatcatcgtgggcacgcccggccgcgtgatcgatcacctcgcc
aagggcaccctcgacctgtcgaacctcgagttcctggtgctggacgaggccgacgagatg
ctgaccatgggcttccaggaggacgtcgagcggatcctcgccgacactccggagttcaag
caggtcgcgctgttctcggccacgatgccgccggcgatccgcaagatctccaagaagtac
ctgcacgacccggtcgaggtcaccgtcaaggccaagaccgcgacggcctcgaacatcacg
cagcgctacctgcaggtcgcgcaccagcgcaagctcgacgcgctcacccgcctcctcgag
gtggaggagttcgacgggatgatcatcttcgtccggacgaagtcggccaccgaggagctc
gccgagaagttgcgggcgcgcgggcacgccgccgccgcgatcaacggcgacatcgtgcag
gcgcagcgcgagcgcacgatcggccagctcaaggacggcaagatcgacatcctcgtcgcg
accgacgtcgcggcccgcggcctcgacgtcgagcggatcagccacgtcgtgaactacgac
atcccgcacgacaccgagtcctacgtgcaccgcatcggccgcacgggccgcgccggacgc
aagggcgacgcgctgctcttcgtgaccccgcgcgaacggcacctgctgcgcgccatcgag
aaggccacccgccagccgctgaccgagatcggcctgccgtcggtcgaggacgtcaacgcg
caccgcgtggagaagttcggcgagtcgatcaccgagaacctctccaacgaccacctgcag
atgttccgccgcctcatcgaggactacgtgggcgccaacgacgtcccgctggtcgacgtg
gccgcggcgctggcgctgcagtcgcgcgacggcgcgtcgttcctgctcaagccggatccg
ccggagcgtgagcgcaatgcccgcgaccgcaaggaccgggatttcggcgaccgcgatgcg
cggcccggtcgcggccgggaccgggatcgggaccgcgaaccgtcgacgcaccgcaagacg
ggccggccgatggtgccgtaccggatcgcggtcggcaagcgccagcacgccaccccgtcg
cagatcgtgggagcgatcgccaacgagggcgggctgcggcgcagcgacttcgggcacatc
agcatccgtccggaccacagcatcgtcgagctgccggacgatctggaccgcgatgtcttc
gacgcgttggagcggacccgcatctcgggccagctgatcaacctcgagcgggatcccggc
gcaccctcgggccggcccgcctcgggcaagcagcggttccgggcggggcgcaagcgctga
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