KEGG   Tsukamurella pulmonis: TPB0596_33650
Entry
TPB0596_33650     CDS       T08311                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
tpul  Tsukamurella pulmonis
Pathway
tpul03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpul00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TPB0596_33650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpul03021]
    TPB0596_33650
   03019 Messenger RNA biogenesis [BR:tpul03019]
    TPB0596_33650
Transcription machinery [BR:tpul03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     TPB0596_33650
Messenger RNA biogenesis [BR:tpul03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     TPB0596_33650
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N AAA_25 NACHT Spore_III_AA AAA_22 DUF7084 Pheromone
Other DBs
NCBI-ProteinID: BDD83602
LinkDB
Position
complement(3376077..3378071)
AA seq 664 aa
MTDTDVTTSPETATATVSTTRADERRRSGLNGMVLAELRGIASELGIKGISGLRKGDLIA
AITEHGGAAKTAPKAAKAAAPKAEAPAETAPTTTEAPKAEAPKAEAPKNDAPADAPKNEG
RGARAPKADKAEQAPSEANAQADAPRGDGEQSQREGGQRRERNQRRERNQNGNQNQDGEN
RQQGDRQQGDRQQGENRQQGEGRQDRRQQGDRQQGENRQRGNNGPSNDQNNNGPDEGDGQ
GRRGRRFRERRRGRDRGQNDGEPQVSEDDVLQPVAGILDVLDNYAFVRTSGYIAGPNDVY
VSMNMIRRNGLRRGDAITGAVKMPRDGENNDGGNQGGGGGGRGNQSNRQKFNPLVRLDTV
NGQDVDSAKNRPEFNKLTPLYPNQRLRLETAQNILTTRVIDLIMPIGKGQRALISAPPKA
GKTTVLQDIANAIATNNPECYLMVVLVDERPEEVTDMQRSVRGEVISSTFDRPPSDHTSV
AELAIERAKRLVEGGKDVVVLLDSITRLGRAYNNSSPASGRILSGGIDSTALYPPKRFLG
AARNIENGGSLTIIATALVETGSTGDTVIFEEFKGTGNAELKLDRKISERRIFPAVDVAA
SNTRKDELIMAPDEAVVVNKLRRVLSALDSQQAIEMLISQLKKTQNNIEFLMTVQKNSGF
GDND
NT seq 1995 nt   +upstreamnt  +downstreamnt
gtgaccgatacggacgtgaccaccagcccggagacggccaccgccactgtcagcaccacg
cgggccgatgagcggcgccgctcgggcctcaacggcatggtgctcgccgagctccgcggc
atcgcgagcgagctggggatcaagggcatctccggcctgcgcaagggcgatctgatcgcc
gcgatcaccgagcacggcggcgccgccaagaccgcgccgaaggccgccaaggcggccgcg
ccgaaggcggaggcgccggccgagaccgcacccacgaccaccgaggcccccaaggccgag
gctccgaaggccgaggcgccgaagaacgacgcccccgccgacgcgcccaagaacgagggc
cgcggcgcacgcgcccccaaggcggacaaggcggagcaggcaccgtcggaggcgaacgcc
caggccgacgcgccccgcggcgacggcgagcagagccagcgcgagggcggccagcgccgc
gagcgcaaccagcgtcgcgagcgcaaccagaacggcaaccagaatcaggacggcgagaac
cgccagcagggtgaccgccagcagggcgatcgccagcagggcgagaaccgtcagcagggt
gagggccgccaggaccgccgccagcagggtgatcgccagcagggcgagaaccggcagcgc
ggcaacaacggcccgtcgaacgatcagaacaacaacggccccgacgagggcgacggccag
gggcgccgcgggcgccgcttccgtgagcgccgccgcggccgcgaccgcggccagaacgac
ggtgagccgcaggtcagcgaggacgacgtcctgcagcccgtcgcgggcatcctcgacgtg
ctcgacaactacgccttcgtgcgcacgtcgggctacatcgccggcccgaacgacgtctac
gtctcgatgaacatgatccgccgcaacggcctgcgccgcggcgacgcgatcaccggcgcc
gtgaagatgccccgcgacggcgagaacaacgacggcggcaaccagggcggcggcgggggc
ggccgcggcaaccagagcaaccggcagaagttcaacccgctcgtccggctggacaccgtc
aacggccaggacgtggattcggcgaagaaccggcccgagttcaacaagctcacgccgctc
taccccaaccagcggctgcgcctggagaccgcgcagaacatcctcaccacccgcgtgatc
gacctgatcatgcccatcggcaagggccagcgcgcgctgatctccgccccgccgaaggcc
ggtaagaccacagtgctgcaggacatcgcgaacgcgatcgccaccaacaaccccgagtgc
tacctcatggtggtgctggtggacgagcggcccgaagaggtcaccgacatgcagcgcagc
gtgcgcggcgaagtcatcagctccaccttcgaccgcccgccgtcagaccacacctcggtc
gccgagctcgccatcgagcgggccaagcgcctcgtcgagggcggcaaggacgtggtggtg
ctgctcgactcgatcacccgcctcggccgcgcgtacaacaactcgagccccgcgtcgggc
cgcatcctctcgggcggtatcgattccacggccctgtacccgccgaagcggttcctgggc
gcggcgcgcaacatcgagaacggcggctcgctgacgatcatcgccaccgcgctcgtcgag
accggctccaccggtgacaccgtgatcttcgaggagttcaagggcaccggcaacgccgag
ctcaagctcgaccgcaagatctcggagcggcgcatcttcccggccgtcgacgtcgcggcg
tcgaacacccgtaaggacgagctcatcatggcgcccgacgaggccgtcgtggtgaacaag
ctgcgccgtgtgctctcggcgctcgacagccagcaggccatcgagatgctgatcagccag
ctcaagaagacgcagaacaacatcgagttcctcatgactgtgcagaagaacagcggcttc
ggcgacaacgactga

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