Candidatus Thiothrix putei: QJT81_05005
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Entry
QJT81_05005 CDS
T10292
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tput Candidatus Thiothrix putei
Pathway
tput03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tput00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJT81_05005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tput03019
]
QJT81_05005
03009 Ribosome biogenesis [BR:
tput03009
]
QJT81_05005
Enzymes [BR:
tput01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QJT81_05005
Messenger RNA biogenesis [BR:
tput03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QJT81_05005
Ribosome biogenesis [BR:
tput03009
]
Prokaryotic type
rRNA helicases
QJT81_05005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_30
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WGZ95348
UniProt:
A0AA95HHE9
LinkDB
All DBs
Position
complement(970824..972776)
Genome browser
AA seq
650 aa
AA seq
DB search
MSPETNTLPAFTEFGLAAPVLQAVQDLGYETPSAIQAETIPYLLEGRDVLGQAQTGTGKT
AAFALPLLSRLDMSKTGPQILVLAPTRELAIQVAEAFQKYAGKLPGFHVMPIYGGQDYRT
QFRQLERGVQVVVGTPGRVMDHLRRGSLKLDGLQALVLDEADEMLRMGFIEDIEWIMEQT
PPNRQIALFSATMPPAIHRIAQSYLTDPAEVKIKVKTTTADTIRQRYWLVSGLHKLDALT
RILEAEPFEAVIIFVRTKNETVELADKLQARGYSAVALNGDIPQNVRERTIDQLKKSKID
ILIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGDAILFVSPRERHLL
RAIERATRKPIDLMELPSTEVINNLRIAQFSQRITDTLAEEGLDFFSQLLESYEREHNVP
AIEIAAALAKLLQGDAPLLLEERKNHAAFNPNADREREQERRPGKRKSNAANSAFSSDDD
TIPMERFRIAVGRTHGVKPGNIVGAIANEAGLDSRYIGYIEIQEDCSLVDLPAGMPKDIL
HELRTARVAGQMLNIEPAGEAAADYSPNRGGSSGGRRERDDRRPPRRDGPPPRRDSARSG
ERPDRRPRSEKEKAPFVADGKPKFGGDKPPARKPTIKKAPNKDKGKPKRP
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtccccagaaacaaacacactccccgcgttcactgaattcggccttgctgcccctgtt
ttacaggctgtacaagaccttggctatgaaactccttcagcgattcaggctgaaaccatt
ccctacttgctggaggggcgcgatgtattaggacaagcgcaaaccggcacaggtaaaacc
gctgccttcgccctacccctgctctcacgtttggacatgagcaaaaccgggccacaaatt
ctcgtgcttgcgccaacccgcgaactggcgattcaagtcgccgaagccttccaaaaatac
gccggtaaactccccggtttccacgtcatgcccatttacggcgggcaagactaccgtacc
caattccgccaattggaacgcggcgtgcaagtcgtggtcggcacaccggggcgggtaatg
gatcatttacgcagaggctccctcaagcttgacggtttgcaagcgctggtgttggatgaa
gccgacgaaatgttgcgcatgggcttcatcgaagacattgaatggatcatggaacaaacc
ccgccgaaccgccaaattgcgttgttctcagcgaccatgccaccggccattcaccgcatt
gcgcaaagttatttaactgaccctgccgaagtcaaaatcaaggtcaaaactaccacggct
gacactatccgtcagcgttactggttagtcagcggcttgcacaagctggatgccctcacc
cgcattcttgaagccgaaccttttgaagccgtcatcattttcgtgcgcaccaaaaacgaa
acggtggaactggctgacaaactacaggcgcgtggttacagcgccgttgccctcaacggt
gatattccgcaaaatgtgcgcgaacgtaccattgatcagttgaaaaaaagcaaaatcgac
atcctgattgcgactgacgttgcggctcgtggcctggatgtggaacgcatcagtcacgtc
atcaactatgacattccgacagacaccgaatcttatgtacaccgtatcggtcgtaccggt
cgtgcgggacgcagtggtgacgccatcctgttcgtttccccgcgtgaacgccatttgctc
cgcgccattgaacgtgccacccgcaaaccgattgacctgatggaactcccctccaccgaa
gtcatcaacaatttgcggattgcgcaattcagccaacgtatcaccgacaccttggcagaa
gaaggcttggatttcttctcacaattgctggaaagctacgagcgcgaacacaacgttcct
gctatcgaaatcgccgcagcccttgccaaactactgcaaggcgatgcgccgctgttgctg
gaagaaaggaagaatcatgctgctttcaaccccaacgctgatcgtgaacgtgagcaagaa
cgccgccccggcaaacgcaaatccaatgctgccaattccgcatttagtagcgacgacgac
accattcctatggaacgtttccgcattgcggtggggcgtactcatggggtaaaaccgggt
aacatcgttggtgctattgccaacgaagcggggttggatagccgttacatcggttatatc
gaaatccaagaggattgcagcttagtcgacttaccggctggaatgccgaaagacattttg
catgagttaagaaccgcacgggtcgcagggcaaatgctcaatatcgaaccggctggtgaa
gccgccgctgattactcccctaaccgtgggggtagtagtggcggacgccgcgagcgtgat
gaccgtcgcccgccgcgccgtgacggcccaccaccccgccgtgatagtgcacgtagtggt
gaacgccctgatcgtcgcccacgcagcgagaaagaaaaagcccctttcgtggcagacggt
aagcccaagtttggtggtgacaagccgcctgctcgcaaaccaactatcaagaaagcgccg
aacaaagataagggcaaacccaaacgcccctaa
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