Theileria parva: TP04_0340
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Entry
TP04_0340 CDS
T00254
Name
(RefSeq) DNA-directed RNA polymerase II subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tpv
Theileria parva
Pathway
tpv03020
RNA polymerase
tpv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TP04_0340
09124 Replication and repair
03420 Nucleotide excision repair
TP04_0340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpv03021
]
TP04_0340
03400 DNA repair and recombination proteins [BR:
tpv03400
]
TP04_0340
Enzymes [BR:
tpv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TP04_0340
Transcription machinery [BR:
tpv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TP04_0340
DNA repair and recombination proteins [BR:
tpv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TP04_0340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
3500855
NCBI-ProteinID:
XP_763975
UniProt:
Q4N2K9
LinkDB
All DBs
Position
4
Genome browser
AA seq
1190 aa
AA seq
DB search
MDSDFYFTSTQHVSGSERLSESQYINSTFSEYSPPKYDIDQDLDHSQYLKAVDENFTEED
TWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPPIEITPQPNYRPEEEEENSILY
RLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETFVNENGKLVQTD
STVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGECVFDQGGYFVVNGGERVLIAQERM
ANNFVYVFNKKNSKYSAVAQLRSQPDFIQGVTSLTIMISNSQLTKNKMVAVLPYIRSDIP
VPILFRALGCISDRDILQRIVYDFSDTQMLSLMRASLEECKRGPTVGALHEERLNFAKET
LRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGSLMAS
SFGTLFRKLAKDVERFLKNQIDSGRSFDVAGAIKSCSQITQGLQYQLLTGNWGRDKDGNV
VRTGVSQVLNRLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVG
LVKNLALMCYISVGSLSSTILDFLLEFGMDSLDEISPILIKDRVKIFLNGTWVGVFNQPD
SLVNVLLELRRKGNISSETSIVRDIMSNEIKIFTDAGRSMRPLYIVENNRLLITKKHADM
IENRQLTWSGLLETGVVEYIDCEEEEICMIAMFPDDLVNNNNYCNSYTHCEIHPSMILGV
CASIIPFPDQNQSPRNTYQSAMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEF
LRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVI
ESFTKPTASGNFLNLKRGDYSKLDNDGLVEPGSRVLGDDIIIGRSSPVEADPNNPQYTSE
MNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRSIRVPQIGDKFASRHGQKGTI
GMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDATPFSKM
TLDQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGP
VTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLS
VANLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKLILTEA
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggattctgatttttattttacttctacacaacacgtttctggatcggaaaggttatca
gaatctcaatacatcaacagcaccttttccgaatactcacccccaaaatatgatatcgat
caggatcttgatcactctcaatatttaaaggctgtagatgagaatttcacagaggaggat
acctggaaggtcataggttcattttttaatgaacacgggttggttcaccaacaaattgaa
agttttaatgatttcataacatatcgtatgcaggagatcatagacgcacacccaccaatt
gagatcacgccgcagccaaattatcgacctgaagaggaggaggaaaatagtatactctat
agattaaaatttggccagctatctctaaacaagccttcggtggaagagaaggatggagtt
ttcaaacacatatggccgcaagaagcaagactgagaaacttaacatacgcctcccaagtg
tacattgacattgagcaggagacatttgttaatgaaaatggaaagctggtccaaacagac
tccacagtgtacccaagagttcctctgtgtagaatgccaatgatgcacaagtcctcatac
tgctggaccagaggccttaacgaccgggatttgtcagatatcggcgagtgtgtatttgac
caaggaggttacttcgttgttaacggaggagagagagttttaatagctcaggagagaatg
gcgaacaacttcgtctatgttttcaataagaaaaactccaagtattcagcagttgcacag
cttagatcacaacctgacttcatccagggagttacatcccttacaattatgatttcaaat
tcgcaactcacaaaaaataagatggtggcagtactcccgtatatcagaagtgatatacca
gttccgatacttttcagagcacttgggtgtatctcagacagggatatactccagagaata
gtgtacgatttctcagacactcaaatgctgtcgttaatgagagcaagccttgaagaatgt
aaaagaggccctacagtgggagcacttcacgaggagcgtctaaattttgctaaggaaaca
ctacgccgtcacttcttaccacacgttgggacagaagtgggttctgagtctaaaaagtgt
ttttacctggggtacatgatacacaggctactcctaaaccagttaggacgtataaatgaa
gatgacagagaacacttcggaaagaaaagactagatctagctgggtccctaatggcaagt
agctttgggacattgtttagaaagctggccaaggatgttgaaaggttcctaaaaaatcaa
attgattcaggacgctcgtttgacgtggcaggagctattaaatcttgctcacaaataaca
caaggcctacaatatcaactcctaacgggaaattggggaagagataaggatggaaatgta
gtgagaacaggagtttcacaagtcttgaatcgtttaacatttgcatcatatttgtcacac
cttagaagattaaacacaccactaggaagagaagggaaaatggcaaagccgagacagtta
cacaatacacattggggaatgatatgcccagcagaaaccccagaagggcaagccgttggt
ttggtaaagaacctagcattgatgtgttatataagtgtcggaagcctatcaagcacaatc
ctggactttttgctggagtttggaatggactctttggatgaaataagtccaattttgata
aaagacagagttaagatattcctaaacggtacctgggtaggagttttcaaccagccagat
tctttggtaaacgtactgttggagctgagaaggaagggaaatataagtagcgaaacgtca
atagtaagagatatcatgtcaaacgagattaaaatattcacagatgcaggtcgttcaatg
aggcccttgtatatagttgagaataaccgactgttgataacaaagaagcacgctgacatg
atagaaaaccgtcaattgacctggtcaggactgctggagacaggagtggtggagtacatt
gattgtgaggaggaggagatatgtatgatagcaatgtttccagacgatcttgtgaataat
aataactactgcaacagttacacacactgtgaaatacacccgagcatgatattgggagtg
tgtgcctctattatacccttcccagaccagaaccagagtccaaggaacacataccagtcg
gctatggggaagcaagccatgggagtgtacagcacaaactataacttaagaatggatact
ctaagccatgtactatattatccacagaagccattagtgtgcacaagatcaatggagttt
ttaaggtttagagaactacctgcaggaattaactccatagtggcaattatgtgctacaca
ggatacaaccaggaagactcactaatcatgaatcagtcatcaattgatagaggactgttt
agatcagtgttcaacaggacatattcatcggaggaaaagtatttgggtagcacagttatc
gagtcgttcaccaaaccaacagcatcaggaaacttcttaaatttgaagaggggggattac
tcgaaactagataatgatgggcttgttgagccaggaagcagagtattgggagatgacatc
ataataggaagatcatcaccagtggaagcagacccaaataacccacaatacacctctgaa
atgaatttgagaatggactgtagttgttgcctgagacctaacgaaaatggagtggtggat
aacgttcttttaacagtaaacaacaaggggtgtaaattcacaaaagtaaaggtgcgaagt
ataagagtgccccaaattggagataagttcgcaagcagacatggccagaaaggaacgata
ggaatgacgtttagaatggaagatctcccattcacatgtgatgggatagtacctgatatt
atcatgaacccacacgccgtgccctcaagaatgacaataggacacctgattgagtgttta
ctagggaaagttggatctctggttggtatggaaggtgacgcaacaccattcagtaaaatg
acactggaccagatttctaaccgtttattcaagtgcagatactcgagatacggaaatgaa
gccttccataacggattcacaggtaacctgatggcgagtaagatatttgttggtccaaca
tattaccaaagattgaaacatatggtggaggataaaatacatgctagagctagagggcca
gtaacaatgttgacaaggcagccaacagaaggacgctctagagaaggtgggctcaggttt
ggagaaatggaacgtgactgtatgatatcacacggagcagcaaagatgctcaaggaaagg
ttatttgatcaatcagacgcatacagagtacacgtttgcaatttctgcggactactctca
gtagcaaacctgaacaacagctcattccagtgcacagcatgcgataataagacacaaatc
tcacaagtcacaattccctacgcctgcaaactactcctacaggagttaatggcgatggca
atttatccaaagttaattttaaccgaagcctag
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