Treponema pallidum subsp. pallidum Nichols: TPANIC_0704
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Entry
TPANIC_0704 CDS
T02709
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tpw
Treponema pallidum subsp. pallidum Nichols
Pathway
tpw03410
Base excision repair
tpw03430
Mismatch repair
tpw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TPANIC_0704 (recJ)
03430 Mismatch repair
TPANIC_0704 (recJ)
03440 Homologous recombination
TPANIC_0704 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpw03400
]
TPANIC_0704 (recJ)
DNA repair and recombination proteins [BR:
tpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TPANIC_0704 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TPANIC_0704 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TPANIC_0704 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AGN75879
UniProt:
O83702
LinkDB
All DBs
Position
complement(770170..772290)
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AA seq
706 aa
AA seq
DB search
MKRWRAKALDEGRVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYLPGPFRFH
AMSAAVDRLRLAHERKEKVLIFGDRDADGISATTLLFEALCAFGLTVCWRVPVADEPYGL
SCNAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVLVIDHHAAPETLPDAIIINAK
VPGAGYPHEFLSGCATAWKVVTALRFSTSGWYQRPVVLLHVRPVTGAYTIEAVKMCNMEV
VDRLSETVVPRMLLPSHTRLGAFLEGQEVFVWDEQVVRTQLAKVFGGEFPWRFTDVRPRM
AAFFPQCERASLLRMKDFSRIGRARSKPMEEIESFINLFITFVQKDTQLYRGAADELQLV
AISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAIQRLMGKKLGTVEVGWSIVPL
INATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARASLET
YSNRLAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYHLFSLL
DPLADLFSDYGGHAFAAGFSIPSERIPQLLHRMELYAATIEFADESAQECGEFDAELDAT
QMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGRTERVHVKLTLDAQVHKWPAI
YWGAGEKLAQEFAVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggtggcgtgcaaaggcacttgacgaagggcgtgtccgcgagcttaccgcgcgg
tatagctgctcggcgcttgaggcggccatccttgtgcgtcgcaaggtagtggatgctgac
gcactcctttttcattttgagcgtgatctacgctatctgccaggaccgttccgtttccat
gcgatgagcgctgcagttgaccgtttgcgtcttgcgcatgagcggaaagaaaaggtgctc
atctttggtgatcgtgatgcagacggtattagcgccaccacccttctttttgaggctctc
tgtgcatttggcttgacggtgtgctggcgcgtgccggttgccgatgagccctatgggctc
tcgtgcaatgcagtagatgagcatgcggccgcagggggtactctcattgtgaccgttgac
tgcggtatttctaatcgcgcagaaattgcgtatgcgcgtcacagaggtattgacgtactg
gttattgatcaccatgcggcccctgagacactccctgatgcaattatcattaatgcaaaa
gtgccaggtgcagggtatccgcacgagtttctctcaggctgtgcaactgcgtggaaggtg
gtaacggcgctccgtttcagtaccagcggctggtatcagcggcctgtggtgcttctacac
gttcgtccggtgactggggcgtatacgattgaggctgtaaaaatgtgtaatatggaggtg
gtggaccgtctttcggaaacggtggtcccacgtatgctcctgccatctcatacgcgtctt
ggtgccttcctggagggtcaggaagttttcgtatgggatgagcaggtggtgcgcacgcag
ttggccaaagtgtttggtggagagtttccctggcgttttaccgatgtgcggccgcgtatg
gccgcgttttttccccaatgtgaacgcgcaagccttttaaggatgaaggacttttctcgc
attgggcgtgcgcgctcaaaaccgatggaggaaatcgaaagctttatcaatctttttata
acttttgtgcagaaagatacccagctctaccggggcgcggcggatgaattgcagcttgtg
gcaatttctacgctttctgatcttatggtgttggcgggggagaaccgtattatggtccgc
tacggtctgcaggcgatgaatgaggcgccacgtgtgggtttgcgtgagttgtttgcgata
cagcgtctcatggggaagaagttaggaaccgtagaggtagggtggagtattgtgccgctt
atcaatgcaacggggcggttagggtgtccgcaccgtgcagtggaactgtttttaatgcgc
gaagcttcgcagcgcgcgctgcaggcacgaaaaatggtgcaattgaacgaacagcgaaaa
aagttaggaaggagtgctcgtgcacttgttgagcctcttgcgcgtgcaagtcttgagacg
tacagcaaccgcctggcagtggtttgtagcgataagattcatcggggcgttacggggatt
cttgcaaactgtttgagcgaggcgctgcgcgtgccttgtgtgatcatttgtataatggca
gacgggcacgcggtaggatcgttgcgttcggcgcggggatatcacctattttcgctctta
gatccccttgcagacttgttctctgactatggggggcatgcatttgcggcgggtttttca
attccctctgagcgaattccccagctattgcaccgtatggaactgtatgcggcaaccatt
gagtttgctgatgaaagcgcgcaagagtgtggagaatttgatgcagaactggatgctacg
cagatgacgcgggggcttttgacccttgtcgatcgctttgagccgtacggagaaggcaat
cccccgttgtgctttttggcgaagagattgaaaattttttctgcatcgctttttgggcgt
acagaacgtgtgcacgtaaaattgaccttggatgcacaggtgcataaatggcccgcaatt
tactggggagcaggggaaaagttggcacaggagtttgcagtgggggatgtagttgacgcg
gtttttcaagtgacgcgtaacacgtttcagggaacgtgcacaccgcagctggtcattcaa
gatttgtggaggagtgagtga
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