KEGG   Turneriella parva: Turpa_4097
Entry
Turpa_4097        CDS       T02157                                 
Name
(GenBank) ATP dependent helicase, Lhr family
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
tpx  Turneriella parva
Brite
KEGG Orthology (KO) [BR:tpx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tpx03400]
    Turpa_4097
Enzymes [BR:tpx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Turpa_4097
    5.6.2.6  RNA 3'-5' helicase
     Turpa_4097
DNA repair and recombination proteins [BR:tpx03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Turpa_4097
SSDB
Motif
Pfam: DEAD_assoc DEAD WHD_Lhr WHD_4th_Lhr Helicase_C WHD_3rd_Lhr ResIII Cas3-like_C_2 SecA_DEAD PhoH T2SSK nSTAND3
Other DBs
NCBI-ProteinID: AFM14730
UniProt: I4BBS3
LinkDB
Position
complement(4310105..4314673)
AA seq 1522 aa
MNDAVLQNFHPAVQKWFADSLGQPTPIQAQAWQALATRQHAVISAPTGEGKTLAAFLAVI
DALVKQRIRRQQNGHLEVPAENTRATRVLYVSPLKALSNDIEKNLQLPLAGIQRELKAAG
IETDDIHAMVRTGDTSPAERAKLVRLRPEIVVTTPESLYLMLTSVSGRQMLETVETVIVD
EIHALAGSRRGSHLLLSLARLESLCAARRERDGLANAGDFLQRIAVSATVKPIEAVARFL
VGDQPVALCRDTRPRQFDIRMLLPSQPLTAVMSGEMWQEIYLELAKEIQKHRTTLIFVNN
RRLCERLARHLTELLEGESVSAHHGLPPEGVHAGANLGASVHHGLPPEGVHAGANLGASV
HHGLPPEGVHAGANLGASVHHGLPSDGVSAGANPGVSAHHGSLSHSQRLRGETLLKEGKL
KVMVATSSLELGLDIGTIDLVVQISSPRSIHAFIQRAGRSEHHKNGTSRALLVPLTRDDL
SECVALVRALRQGALESLELATPALDILAQQIVAEVAMRDIGADELFALVVREAQWQNLA
RSDFDAVLEMLNDGYSLRFGRRSRYIFYDKTDRVLRARPGARITAALNGGAIPENFEYEV
IDESSSGPLSHVAGAPENRAHGGAFVGTVHEDFAIESSQGDVFQLGNRLWQIRQISGNRV
SVVHAPDKHPTIPFWIVDVPGRTDALSDALSTMHELFNGLGDPNEFVRQISAETGLPSAV
IGQLADYYRETQASLGLLPTKSTVVLERFFDEVKNCHIVLHSVFGAQVNRAWGLALRKRF
CRQFNFELQAAANDNAIILSLSHTHSFHLPEVFSYLKSVTAEQVLIQALLDAPMFEVRWR
WNASRALAILRRSTRGKVPAQWQKSGAQDLVALLFPDQIACAENLSGPRAIPDHPLVKQT
VSDCLHEAMDAKGFVQVLQRIESGDIRTIYTDSATPSPLAHEIINARPYAFLDDAPLEER
RTRAVYTEVPGARLPRTASCPVRIDTEARQGDEISDDTIAAVKAETLYPARNENELYDLI
TQFALVPEAEVAELGGDADLHALVSRGKVFRFPSPPAPLHKVERGANTDSSDSKETQLSP
PSPLNGEGSRGGEAYFISADKAELISAVYTQIDSEDEVAAQRRMSGIETILLAHLELLGP
LTAESLAARLALPITRVTLALSGLEAQGSAFVLHRNGLTLYVERTFYQRLQHYGRRRSVQ
KRLSPLEYLAFLAEWQHVSEPLTGPESLAKILRQLQGAELSLDEWNSALRLRITDYNERM
LEDHLLSGEFFWWRAPGAAGKSITRKTRYMLLSRDLWHELGPLSNTGAELSVDARRVRDY
LERNGASFVHDIHTGRPGEAQPKIFTEQTLRGLRELVAQGLVTSDQFFALRRLAPAAAQR
GRLAIRRMQPQFPHGRFSLVRFNSSDAPADEDARLAAIARLLLSRHGVVYRYAAENDFFK
APWPRLVRTLRLMEMAGHVRSGRFIDGLWGEQFATPTAAAMISQGIGGTYKDVTQQDPIA
QVRQSLQKLGALAYSGTVALPA
NT seq 4569 nt   +upstreamnt  +downstreamnt
atgaacgacgccgttttgcagaattttcaccctgccgtgcagaaatggttcgccgattcg
ctgggtcaaccaacgccgattcaggcacaagcctggcaggcactcgcgacgcgccagcac
gcagtcatcagtgcgcccaccggcgaaggcaaaacactcgcggcatttctcgcagttatt
gatgcacttgtcaaacaacgaattcgccgccagcagaatgggcatcttgaagtaccggca
gaaaacacgcgggcaacgcgtgtgctctatgtctcacctttaaaggcgctttcgaacgac
atagaaaagaatctgcagctgccccttgccggtattcaacgcgagctcaaagcagcgggc
atcgaaaccgacgacattcacgcgatggtacgaacaggcgacacttcgcctgccgagcgt
gcgaagcttgtgcgcctgaggcccgaaatcgtcgtcacaacccccgagtcgctctacctg
atgctcacgagcgtctcgggccgccagatgctcgagaccgtcgaaacggtcattgtcgac
gaaattcatgcccttgccggttcgcgcagaggatctcatcttcttctgtctctggcgcgc
ctcgagagtctctgcgcggcacgccgtgaacgcgatggcctggccaatgccggtgatttt
ctgcagcgcatcgcagtatctgcgacagtgaaacccattgaggcagtcgccagatttctc
gttggcgatcagccggtggctctctgccgcgacacgcggcctcgccagttcgatattcgt
atgctgttgccttcgcagcccttaacggcggtgatgagcggcgaaatgtggcaagagatc
tatcttgagctggcgaaagaaattcagaaacaccgcacgacgcttatcttcgtcaacaac
cgccgcctctgcgagcgccttgcccggcacctgaccgaattactcgaaggcgaaagtgtc
tccgcacaccatggtttgcccccagagggcgtccatgccggggcaaacctcggtgcgtcc
gtgcaccatggattgcccccagagggcgtccatgccggggcaaacctcggtgcgtccgtg
caccatggattgcccccagagggcgtccatgccggggcaaacctcggtgcgtccgtgcac
catggattgccctcagacggcgtctctgccggggcaaacccaggtgtctccgcacaccat
ggatcactctcccattctcagcggcttcggggtgagaccctgctgaaagagggcaagctc
aaggtcatggtggcgacgagttcgctcgagctggggctcgacattggcacaattgacctc
gtggtgcagatatcttcgccgcgctcgattcatgcctttattcagcgcgcgggtcgttca
gagcaccataagaacggcacgtcgcgcgctctgctcgtgccgctgacgcgcgacgaccta
tcagagtgcgtggcgcttgtgcgggcactgcggcaaggggctcttgagtcgctcgaactg
gcaacaccggctctcgatattctggcgcagcagattgtcgcagaggtggcgatgcgcgac
attggcgcagacgagctttttgcgctggtcgtgcgcgaagcgcagtggcaaaatctggcc
cgaagcgattttgatgcggtgcttgaaatgctgaatgacggttattcgctgaggttcggt
cggcgttcgcgctatatcttctacgataaaacagacagagtactgcgcgcaagaccggga
gcgcgcattacggcggcgctgaacggtggcgcgatacccgaaaattttgaatacgaagtc
atcgacgaaagttcgtcagggcctctctcgcatgttgcgggcgcgcctgagaatagggcg
cacggtggcgcttttgtcggcacggtacacgaagactttgcgattgaatcttcgcagggc
gacgtatttcagctcggtaaccggttgtggcagattcgccagatttcgggaaaccgcgtt
tcggttgtgcacgctcccgacaagcacccaacgattccattctggatagttgacgtgccc
ggtagaaccgatgcgctcagcgacgcattaagtaccatgcacgaacttttcaatggcctc
ggcgaccctaatgagttcgtcaggcaaatctcggccgagacggggttgccaagtgccgtc
attggccagctggccgattattaccgcgaaacgcaggcgagtctcggcttgttgccgacg
aagtcgacagttgtactcgagcgtttttttgacgaagtcaagaactgccatattgttttg
cattctgtctttggcgcgcaggtcaaccgcgcatggggcctggcgctcagaaagcggttt
tgccggcagttcaattttgaattgcaggctgcggcaaacgacaatgcgattatactttcg
ctgagccacacgcatagctttcacctgcctgaagttttcagctacctgaagtctgtcacc
gctgagcaagtgctgatacaggcgctgctcgacgcccccatgttcgaggtgcgctggcgc
tggaacgcctcacgcgcactcgcaatcttgaggcgcagcacgcgcggcaaggtgcctgca
cagtggcagaaaagcggggcgcaagatctggtggcgctgctctttcccgaccagattgcc
tgcgctgaaaacctgagcggaccgcgtgcgatacccgatcatccgctggtgaaacagacg
gtaagcgactgtcttcacgaagccatggacgccaaagggttcgtgcaggtgctgcagaga
attgaatcgggtgatattcgcaccatctataccgacagcgccacgccttcgccgctcgca
catgagattatcaatgcccgcccgtatgcgtttctcgacgacgcaccgttagaagagaga
agaacccgcgcggtgtacacggaggtaccgggggcgcgcctgccacggacggcctcttgc
cccgtacgtattgacactgaagcgaggcagggcgatgaaatcagcgatgacacaatcgca
gcggttaaagccgaaactctctacccggcgcgcaatgaaaatgaactctatgacctcatc
acgcaattcgcgctggtacctgaagccgaagtcgcagaactcggcggcgatgccgacctg
cacgcgcttgtctctcgtggcaaggtatttcgttttccctcacccccagcccctctccac
aaagtggagaggggagcgaatacagattcttctgattcgaaagagactcagctttctccc
ccctctccattaaatggagaggggagtcgggggggtgaggcttacttcatctccgcagac
aaggccgaactcatcagcgcggtttatacacaaatagatagcgaagacgaagttgcagca
cagcgccgcatgagtggcatagagacaattctgctcgcacacctggaacttctcgggccg
ctgaccgcagagagtcttgccgcaaggctcgcgttgcccattacccgcgtcacgctcgcg
ctctcgggtctcgaagcgcagggcagtgcgtttgtgttacaccgcaatggccttacactc
tatgtggagcgcactttttaccagaggctgcagcactatggcaggcggcgctcggtgcag
aagcggctaagcccgctggaatatcttgcgtttctcgccgaatggcagcacgtcagcgaa
ccgcttaccgggccagaatcgcttgcgaagattttgcggcagctgcagggggccgagctt
tcgctcgacgaatggaacagcgcgctgcgtctgcgtatcaccgactataacgagcgcatg
ctcgaagaccacctgctttcaggcgagttcttctggtggcgcgcgccaggtgctgcgggc
aaaagcatcacccgcaagactcgctacatgctgctttcgcgtgacttatggcatgaactc
gggccgctctcgaacacaggcgcagagctttcagtcgacgcgcgccgtgtgcgagactat
ctcgaacgtaatggggcttcattcgtgcacgacattcacacgggcaggccgggtgaggcc
cagccaaaaatttttaccgaacagacgctgcgcgggcttcgcgaactggtcgcgcagggg
ctcgtgacctctgaccaattctttgctttgcgccgcctcgcgccggctgcagcgcagcgc
gggcgcctggcaataaggcgaatgcaaccccagtttccgcacggcagattctcgctcgtg
cggttcaatagcagcgatgcgccagctgatgaagatgcgcgccttgctgcgattgcgcgt
ttgctgctcagccgtcacggtgtcgtgtaccgatacgcagccgaaaatgacttcttcaaa
gctccctggccccggctcgtgcgcacgctgcgcctcatggagatggctggtcatgtcaga
tcgggccggttcatcgacggtctctggggcgagcagtttgcgacaccgacagcggcagcg
atgatttcacagggcattggcggtacatataaagacgtaactcaacaagatccgatcgct
caggtgcggcagagtctgcaaaaattaggagctctggcgtactcaggtaccgtcgcgttg
cctgcataa

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