Trueperella pyogenes TP8: X956_03830
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Entry
X956_03830 CDS
T03579
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tpyo
Trueperella pyogenes TP8
Pathway
tpyo03420
Nucleotide excision repair
tpyo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X956_03830
03430 Mismatch repair
X956_03830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpyo03400
]
X956_03830
Enzymes [BR:
tpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X956_03830
DNA repair and recombination proteins [BR:
tpyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
X956_03830
MMR (mismatch excision repair)
Other MMR factors
X956_03830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_30
UvrD_C_2
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AJC70497
LinkDB
All DBs
Position
821432..824806
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AA seq
1124 aa
AA seq
DB search
MTSYEDFAATLEFRPTCEQEAVIRSEDHAIAVIAGAGSGKTATMSQRIAWHVVNGNVRPE
EVLGLTFTNKATGELAERVERQLRAAAANGLIAPSLQPGESEADAIHREFARPTIATYNS
FASEIASSYAMLIGEDPRARLITDAERYQIMARIVSDIAAEDPRFTALADRSVSSIVSNA
LHLADQMTGNMVDAEELRAYLAREAAALMQITDVRAKRGTLTEHSKAEQTKTKGMLEALK
MRICLTFLVEEYLAYKQDNSLIEFADQVVRASRILAEVPQVGDDLRSRYKLILLDEYQDT
SSSQAAFIASAFSGAWSVCAVGDPNQAIYSWRGASSAALSDFMDSFAVARNLTLSTAFRN
GQRILDVANALTVGKLSYPKLDMKTLQPRPNAQAGEVVLIHRTYREDSYRDLAAHFADAF
AKVRRENQGRAGQPNSPMPTAAILCRARSYMPYAIKALEEAGVPYEVVGGEVLIEKQEIR
LVRSVLGLAVNPARNDLLVALLTFFAIGAKDIAALSAFARAQAKVTEDQLSEQVSDGAVQ
VAPNLVEALDTLPAEPVPGMSDVGHERLTHIADLLARARASRHLTVPEAISTVIDLLDLR
AYAKARRLGSARVQDALASFIGLGAKFAGEMGAGLEAFVEWVDMLEAHEGVAEGEASADA
AIMGQGQIEPKSGVVQLLTIHAAKGLEWDLVGIPDMRAGGFDERLDEKLWQESIDALPYS
FREDRNHLPDFVLSDELKKWGIVTVENKATILETIHEHRTGQFAKHHIAESRRLAYVAVT
RPRNLLVLASYDLASADKAANALKNLTKDAAGEAGEITMPRNVFITDVEHLAEPGPGNDA
VLTAADLERIATDDSSEAAEEEETRVWPRDIDRSLDTFSGAFQVAEPGKLVEQWAREAEV
IVAERHSPPVSRGLARDYLTASDVVALAQDSVAFLADQYRPIPHRPSRAARTGVLVHEAI
AHHFDAPATLDVDAVAFPGEMPFDVGELNDQRQAELVARFEASRYSSCPPLAVEEAIDVR
VGDYPIRCVIDAVLDTSALPDSPKVTVVDWKTGRRPSPDQVASRQFQLGLYRLAWSRATG
TDLNDIGACFYYLGEDDVHLRELHAGDLTEAQISEHIRTHLEQA
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaccagttacgaagacttcgctgctaccttggagtttcgtccgacctgcgagcaggag
gccgttattcgcagtgaggatcatgccatcgcagttattgccggcgcgggttcgggcaag
acggccacgatgtcccagcgcatcgcctggcatgtcgtcaacgggaacgtgcgccccgag
gaagtgctgggcttgaccttcacgaataaggccaccggcgagcttgccgaacgtgtggag
cgccagctcagggctgcggctgccaatgggctcattgctccgagcctccaaccgggagaa
agtgaagccgacgccatccatcgcgagttcgcaaggccaacgatcgccacctataactca
tttgcttctgagattgcctcttcttacgccatgcttatcggcgaagacccacgggcgagg
ctcatcaccgatgcggagcgctaccagatcatggcgcggatcgtcagtgatatcgctgcg
gaagatccacgctttactgccttagctgatcgttcagtgagttcaattgtcagcaatgcc
ctgcacctggccgaccagatgacgggcaacatggtcgacgccgaggaactgcgcgcctac
ttggctcgcgaggcggcagcactcatgcagatcaccgacgttagggcgaaacgcgggacg
ttgacggagcattcgaaagccgagcaaaccaagactaaagggatgcttgaggcgttgaag
atgcgcatttgcctgaccttcttagtcgaggaatacctagcgtataaacaggataattcc
ctcatcgagtttgccgatcaggttgtgcgcgcgagcagaatcctcgcagaggtaccgcag
gtgggtgacgatctgcgcagccggtacaagcttattttgctcgatgaataccaggacacg
tcatcaagccaagccgcgttcattgcgagtgcattttcaggggcgtggtcggtatgtgcc
gtgggagatcctaatcaggcgatttattcgtggcgaggtgcctcgtcggcggcactgtcc
gattttatggacagtttcgcagtggcgcgcaacctcacgctatcgactgctttccgcaat
ggccaaaggattttggacgtggccaatgcgctgacggtgggcaaattaagctacccgaag
ttggacatgaagaccctccagcccaggcctaatgcgcaggcaggtgaggtggtgctcatc
catcgtacataccgggaagactcctaccgagacctggccgctcactttgccgatgccttt
gccaaggtgaggcgggagaaccagggcagggcagggcagccaaattcgccaatgccgacc
gccgctattttgtgccgggcacgctcatacatgccctatgcgatcaaggcgcttgaggag
gctggcgtgccctacgaggttgtcggcggggaggttctcattgaaaaacaggaaattcgg
ctggtgcgcagcgtcctaggcctggccgtcaatccagcgcgcaatgacctgctcgtcgcg
ctcttgacgttctttgcgatcggtgccaaggacatcgctgcgctgtccgcttttgcccgt
gcgcaggctaaagtgaccgaagatcagctgagcgagcaggtctctgatggcgctgtgcag
gtagcacctaacctggtcgaagcgctagatactttgccagctgagccagtgccgggtatg
agcgatgtcggtcatgagcgtctcacccatatcgccgacttgctcgcacgcgcgcgagca
agtcggcacctgacggtccctgaagcaatctcgaccgtgatagacctgctcgatttgcgc
gcctacgcgaaggcgcgccgcttaggcagtgcacgcgtgcaggacgcgcttgctagcttt
atcggacttggggcgaagttcgctggcgagatgggggcgggccttgaagccttcgtggag
tgggtggatatgctcgaagcacacgagggcgttgccgagggtgaagccagcgcagacgcg
gcgataatggggcaggggcagatcgagccgaaatccggcgtcgtccagcttctcaccatc
cacgctgcgaagggactcgaatgggatctcgtgggaataccggatatgcgagctggcggt
tttgatgagcggctcgatgagaagctgtggcaggaatcgatagatgcattgccctacagt
ttccgcgaagatcgtaaccatctgccggacttcgtgctttccgacgaacttaagaagtgg
ggcatcgtcaccgtcgaaaacaaggccacgattctggaaactatccatgaacatcgcacg
ggacagttcgccaagcatcacattgcggaaagccgcagacttgcctacgttgcagtgacg
cgaccgcgcaatctcctcgtcttggcctcctacgatctcgccagcgcggacaaggccgcg
aacgcgttaaagaatctcacaaaggacgccgccggtgaagccggagaaatcacgatgccg
cgcaacgtcttcatcactgatgtggaacacctggctgaaccgggccctggtaacgacgcc
gtgctcaccgctgccgacttggagcgcatcgccacggatgatagttcagaggcggccgag
gaagaggaaaccagagtctggccccgcgatatcgaccgtagcctggacaccttctcgggg
gctttccaggtggccgagcctggaaaactcgtcgaacagtgggcgcgggaggcggaggtg
atcgtcgcagagcggcactcgcccccagtcagtcgcgggctcgcacgggattatctcact
gcctcggatgttgtggctcttgcgcaagattcggtagctttccttgccgatcagtatcgg
cccatcccacatcgcccgtcgcgagcagctcgcaccggagtgctcgtccacgaagcaatt
gcgcaccatttcgacgcccctgccaccctcgacgtggacgcggtggcgttccccggtgaa
atgccatttgatgtcggcgagctgaacgatcagcgccaagctgagcttgtcgcccggttt
gaagcttcgcgctattctagctgcccgccactggcagtcgaagaagcgatcgatgtgcgt
gtaggcgactacccgattcgctgcgtcattgacgcagtgctagatacctcagcccttccc
gattcgccgaaggtgacagtcgtcgattggaagaccggccgacgcccaagcccggaccaa
gtagcatcacggcaattccagctcggtctgtatcggctggcgtggtcgcgggccacgggc
actgacctcaacgatatcggagcctgcttttactatcttggcgaggatgacgttcatttg
cgcgagcttcacgcgggagacctcaccgaggcgcagatctccgagcacatccgtacccac
ctcgagcaggcttaa
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