Trueperella pyogenes TP8: X956_05900
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Entry
X956_05900 CDS
T03579
Name
(GenBank) DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpyo
Trueperella pyogenes TP8
Pathway
tpyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X956_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpyo03019
]
X956_05900
03009 Ribosome biogenesis [BR:
tpyo03009
]
X956_05900
Enzymes [BR:
tpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X956_05900
Messenger RNA biogenesis [BR:
tpyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X956_05900
Ribosome biogenesis [BR:
tpyo03009
]
Prokaryotic type
rRNA helicases
X956_05900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Plasmid_stab_B
Motif
Other DBs
NCBI-ProteinID:
AJC69645
LinkDB
All DBs
Position
1233730..1235556
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AA seq
608 aa
AA seq
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MTTFAGLNLPENILSAITQMGYENPTPIQEEAIPPLLEGRDVVGVAQTGTGKTAAFALPM
LTHVDADLHHVQALVLAPTRELAMQGAEAIDNFASNTTGLNVVAVYGGSSYVPQINAIKD
GAQVVVGTPGRVMDLIDKGALKLQRVKYFVLDEADEMLRMGFAEDVEKIASGLPAQRVTA
LFSATMPATIRRVAQTHMSDPVEITVTPPASTIATIHQTFAVVPTRHKIGALARVLATTS
ADAALVFVRTRATAEDLAIELSTRGVHAATLSGDVQQRDREKLVDRLRHGTLDVLVATDV
AARGLDVERIGLVVNFDVPREVDTYVHRIGRTGRAGREGTSLTFVTPKERSRLRRIEQIT
GAAMEQVELPTPAEVSGLRARRLVAEAKERYEIGRLSVYREIIAEFRSEQIESDKPLSPE
DLIAALLAIGVRDPGPQPDEEPEHLTARFEGRDERGRRSHRERGERPDRGDRRRPAKPKT
FAGEGTMYRVEVGRKDGVSPGAIVGALTNEGGLNGSQLGRIDIYPTFSLVQISQEIDRDT
QRRIAKARVSGRDLRISKDTGPRQSDERAQRKYRADRKFGEDKRERKFEGRRHIRNHDSS
PRASRQSY
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactacttttgctgggcttaacctgcccgagaatatcctgtccgccattacccagatg
gggtacgagaaccccacccccattcaggaagaggcgattcccccgcttctcgagggccgc
gacgtcgtcggtgtcgcccagaccggtaccggaaagaccgccgcgttcgcactgccgatg
ctgacgcacgtggacgccgatcttcaccacgtccaggccctagttctcgccccgacccgc
gagctggcaatgcagggcgccgaagccatcgataacttcgcttccaacactactggcctg
aacgtcgtcgcggtttacggcggttcgtcttacgtgccgcaaatcaacgcgatcaaggac
ggcgcacaggtggtggttggaacgccgggccgcgttatggacctcatcgataagggcgcg
ctcaagctccaaagagtgaagtacttcgtcctcgacgaggccgacgagatgctccgcatg
ggtttcgccgaggacgtcgagaagatcgcctcagggctgccggctcagcgcgtcacggcg
ctcttttcggccacgatgccggcaacgattcggcgggttgcgcagacccacatgagcgat
cctgtggagatcacagtcacgcccccggcatcgacgatcgccactattcatcagaccttt
gccgtggttcccacacgccacaagattggcgcgctcgcccgcgtgctggcgacgacctcc
gccgatgccgccctcgtcttcgtgcgcacgcgtgcaacagccgaggatctcgccatcgag
ctgagcacgcgcggcgttcacgcggcgacactctccggtgacgtccagcagcgcgaccgc
gagaagttggtcgaccggttgcgccacggcacgcttgacgtcctggtcgccaccgacgtc
gccgcccgcggcctcgacgtcgagcgcatcgggcttgtcgtcaattttgacgtcccgcgc
gaagtcgatacctacgttcatcgcattgggcgtaccggcagagctggacgcgaaggcaca
tcgctgacgttcgtcacccccaaggaacgcagccgccttcgccgcatcgaacagattacc
ggcgctgccatggagcaggttgagctgcccactcctgcggaggtctcgggcctacgtgct
aggcgcctcgtggccgaagccaaggagcgctacgagatcggccgcctgtctgtctaccgt
gaaatcattgccgagttccgtagcgagcagattgagtcagataagcctctctcccccgaa
gacctcatcgccgcgcttttggcaatcggtgtgcgggatccggggccacagcccgacgag
gagccagaacacttgaccgcccgcttcgaagggcgtgacgaacgcggacgccgttctcat
cgcgagcggggagagcgcccggaccgaggcgaccgcaggcggcctgctaagcccaagacc
ttcgcgggcgagggaacgatgtaccgcgttgaggtcggccgcaaggacggcgtttccccc
ggtgcgatcgtcggtgccctcacaaacgagggcggcctcaacggctcccagctcggccgg
atcgacatttatccgaccttctccctcgtgcagatcagccaggaaattgaccgcgatacc
cagcgccgcattgcgaaggctcgcgtttcgggccgagatctgcgaatttcgaaggacacc
ggcccgcgtcaatccgacgagcgcgctcagcgtaagtatcgcgccgatcgcaagttcggc
gaagacaagcgggagcggaagttcgagggccggcgtcatatacgcaaccacgactcttca
ccgcgcgcatcacgacagtcttattag
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