Trueperella pyogenes TP8: X956_07980
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Entry
X956_07980 CDS
T03579
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tpyo
Trueperella pyogenes TP8
Pathway
tpyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X956_07980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpyo03021
]
X956_07980
03019 Messenger RNA biogenesis [BR:
tpyo03019
]
X956_07980
Transcription machinery [BR:
tpyo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
X956_07980
Messenger RNA biogenesis [BR:
tpyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
X956_07980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Spore_III_AA
AAA_25
NACHT
Rho_N
ResIII
CDC27
Motif
Other DBs
NCBI-ProteinID:
AJC69964
LinkDB
All DBs
Position
complement(1704292..1706001)
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AA seq
569 aa
AA seq
DB search
MSTMRLADLKRLASIMGLTLPANARRTDYIPAIREARALQKAQSQGKPAQSKPAKKAEAK
AEKAAPKTAEAKATKDERPARNKRGARKAEEKANQHGDPAVQLDLPVSKARPAKELSQDE
KKAALEALGEAAERRAEESADDDDARGRSRNRRNRNRNRNDRERTDRNRNRNDRDRSVAE
RTEEDADTGEILIPVAGILDVDGNNNYLRTGGYLPGKNDAYVSTQMIRRYGLRRGDAIQG
LVRDASEANNRRGRQHKFNPLVEVTAINGMSPDDAQERPEFNKLTPLYPNEMLRMETSQK
ALTTRVIDLVAPIGKGQRGLIVSPPKAGKTVVMQQIAMAIANNNPDVHLMVVLVDERPEE
VTDMQRLVKGEVIASTFDRPASDHTIVAELAVERAKRLVELGQDVVILLDSLTRLGRAYN
LAAPASGRILSGGVDAGALYPPKKFFGAARNIENGGSLTIIASALVETGSKMDEVIFEEF
KGTGNMELRLSRQLADRRIFPAVDLNASGTRREELLFSPEELKIVWHLRRALGTLELQEA
SDYVLGRMRKTESNGEFLMSIVRGMQNAD
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atttcgaccatgcgactagctgatctcaagcggctggcatcgattatgggtctgacattg
ccggcgaatgctcgccgtaccgattacattccagctattcgtgaggcacgcgccttgcag
aaggcacagtctcagggcaagcctgcgcagtcgaagcctgcgaagaaagctgaggccaag
gcggagaaagccgcgcctaagacggccgaggccaaggcaacgaaggacgagcggcccgcg
cgtaacaagcggggcgcgcgtaaggccgaggaaaaggccaaccagcacggcgatcccgca
gtgcaactcgacctgcccgtatccaaggctcgtcctgctaaggagctgagccaggacgag
aagaaggcggcactcgaagcgctgggtgaggccgccgagcgtcgtgccgaagaatctgct
gacgacgacgatgcgcgcggccgtagccgcaaccggcgcaatcgcaaccgtaaccgcaac
gatcgcgagcgcaccgatcgcaatcgcaaccgtaacgatcgggatcggtcggttgctgag
cgaaccgaggaggacgccgatacgggtgaaattctcatcccggtggccggcattctcgat
gtggacggcaacaacaattacctgcgtaccggcggctacctgccggggaagaacgacgcc
tacgtctccacgcagatgattcgccgctacggtctgcgccgcggcgatgccatccagggt
ctcgtccgtgatgcgtccgaggcgaataaccgccgtggtcgtcagcacaagttcaacccg
ctcgtcgaagtcacggctatcaacggcatgtcgccagatgacgcgcaagaacgccccgag
ttcaacaagctcaccccgctctatccgaacgagatgctccggatggagacctcccaaaag
gcactgaccactcgcgtcatcgacctagtggcgccgatcggtaagggccagcgcgggctc
atcgtctctccgcctaaagcgggcaagacggtggtcatgcagcaaatcgcgatggcgatc
gcgaataacaatcccgacgtccatctcatggtggttctcgttgacgagcgccccgaggaa
gtgacggacatgcaacgcctggtcaagggcgaggtgatcgcctccaccttcgaccgcccg
gcctccgatcacacgatcgtggcagagcttgccgtggagcgggccaagcgcctggtcgag
cttggccaagacgtcgtcatcctgctcgattccctgacccgcctcggccgcgcctacaac
ctggctgccccggcctctggccgaattctctccggaggtgtggacgcaggcgcactctac
ccgcccaagaagttcttcggcgcggcgcgcaacatcgaaaacggcggctcactcaccatc
atcgcctctgcgctggtggagaccggatcgaagatggatgaggttatcttcgaagagttt
aagggaacgggcaacatggagctgcgcctgtcccggcagctcgccgatcgccgcatcttt
cctgcggtggatctcaacgcctcgggcacgcgccgcgaggagctgctgttcagcccggag
gaactcaagattgtttggcatctgcgccgcgccttgggcaccctcgagctccaggaggct
tcggattacgtgctcggtcgcatgcgcaagaccgaatcgaacggggagttcctcatgtcg
atcgtacggggaatgcaaaacgccgactga
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