Thermacetogenium phaeum: Tph_c06730
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Entry
Tph_c06730 CDS
T02276
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
tpz
Thermacetogenium phaeum
Pathway
tpz02020
Two-component system
tpz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tpz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Tph_c06730 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Tph_c06730 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpz03021
]
Tph_c06730 (rpoN)
Transcription machinery [BR:
tpz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Tph_c06730 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_17
HTH_IclR
HTH_3
LacI
HTH_Crp_2
Arg_repressor
MarR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AFV10907
UniProt:
K4LFP9
LinkDB
All DBs
Position
702872..704275
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AA seq
467 aa
AA seq
DB search
MRLSYGINLEQTQKLIMTPELRQAITVLQLSAVDLAQYVENAMLENPLLEVTEDADAEGV
ASSEKFKDDFTREWCEYLSECGQVDRSFDRAWAEEEGERYNFEHFVAQVPTLSEHLDLQL
RLALSDPRDLKIGEFLIGNINDRGYLQISLEEVERTYGYPVRETERILKIIQSFDPPGVG
ARDLSECLLIQLEQRGWRTPALEKLVRFYLGDLANGNLLKIAAALDLPVQDVQHMADLIK
TLDPIPGRNFSRPGENRYIAPDVVVEKFDDEYIILVNDISVPRLMINKTYQSLLNQQESC
DPGTAQFIQNKLKSAIWLIRSIEQRRLTLYRVVSCIVEFQKEFLDKGVKHLKPLNLKQIA
DAAGLHESTVSRAIANKYIQTPQGLFELKFFFTSGVENVLAGKMVAAESIKQVLKELIAG
EDPCRPYSDQQLCELLQAKGINIARRTVAKYRQEIGIPPVRQRKRYR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttgagttatgggatcaacctggagcagacccaaaaactgatcatgacaccggaa
ttgcgccaggcgatcactgtgcttcagctttcggcggtggatctcgctcaatacgtggaa
aacgccatgctggaaaatcctctccttgaagttaccgaggatgctgatgctgagggggtg
gcgtcttccgagaagttcaaagatgattttacgcgggaatggtgtgaatacctttcggag
tgcggccaggttgacaggtcctttgaccgcgcctgggcagaggaagaaggtgagcgctat
aattttgagcacttcgtggctcaggtgcctactctcagtgagcacctggacctgcagctg
cgccttgccctttccgatccccgtgatctcaagataggggagtttttgatcggcaacatc
aacgaccgcggctatctgcagatcagcctggaagaggtggaaagaacatacggttatccc
gttcgggagaccgagcgcattctcaagattattcagagcttcgatccgcctggcgtgggg
gcccgggacctgtctgaatgccttttgattcaacttgaacagcgcggctggcgaacgccc
gccttggaaaagctggttcgcttctatttaggcgacctcgccaacggtaatctgctgaag
atcgccgcggccctggatctgccggttcaggacgtgcagcacatggccgatctgattaaa
accctcgatccgataccgggacggaatttttcccggcccggggagaatcgctacatcgcc
ccggatgtggttgtggagaaattcgatgacgaatatataatcctggtcaacgacatctcc
gtcccgcgcttgatgatcaataaaacctatcagagcctgttgaaccagcaggaatcgtgc
gacccggggacggcccagtttattcagaacaagctgaagtcggccatctggctgatacgc
agcattgagcagaggcggctgacgctctaccgggtagtcagctgtatcgtggaattccag
aaggagtttctggataaaggggtgaaacacctcaagcccttaaacctgaagcagattgca
gatgctgccgggctgcatgagtctaccgtcagcagggcgatcgccaataaatacattcag
accccccaggggctttttgagctgaaattcttcttcaccagcggggtggagaacgtcctt
gccggtaagatggtggcggcggagagcatcaagcaggttttgaaagaactgatcgcaggg
gaggatccgtgccgtccgtacagcgaccagcagctctgtgagctgctgcaggccaagggt
atcaatatagcgcggcgcacggtggcgaaataccggcaggagatcggaatcccccctgtg
cggcagcggaagcgctatcgataa
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