Thermacetogenium phaeum: Tph_c11590
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Entry
Tph_c11590 CDS
T02276
Symbol
cvfA
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase CvfA
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tpz
Thermacetogenium phaeum
Pathway
tpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tph_c11590 (cvfA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpz03019
]
Tph_c11590 (cvfA)
Messenger RNA biogenesis [BR:
tpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tph_c11590 (cvfA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
DUF7266
KH_KhpA-B
fvmYukDl_N
PFF1_TM
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
AFV11381
UniProt:
K4LEB9
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All DBs
Position
1178666..1180222
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AA seq
518 aa
AA seq
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MKGISLTTSVYVVLAVIALLIGVLCGYLLRKYLAEARIASAEEAARRIIEEAQKEADAKK
REAILEAKEEIHQMRTDAERENRERRNEIQRQERRLLQKEEALDRKLEGLEKKEENLYKK
EQELAHRSSQLDELLKKHVAELERISGLTTEEARTILLNNVREEIKRETALIIKEEEARA
KEEADKRAREIVTLAIQKGAADIVAETTVSVVPLPNDEMKGRIIGREGRNIRTLETLTGV
DLIIDDTPEAVILSSFDPIRRETARIALEKLIADGRIHPARIEEMVEKAQKEIEQKIREE
GEEAAFEVGVHNIHPELIKLLGRLKFRTSYGQNVLKHSLEVAYLAGAMASELGANAQLAK
RAGLLHDIGKAVDHEIEGPHVTIGADLARKYRENPEVIHCILAHHGDQEPETVEAVLIQA
ADAISAARPGARRETLEAYLKRLDKLEEIADSFEGVEKSFAIQAGREVRILVKPEVIDDI
QAAHLSREIVKKIEDSLEYPGQIKVTVIRETRYVDYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaggcatttctctgacaacgtcggtttatgtggtcttagctgtgatagcactcctg
ataggggttctctgcggatatttattgcgcaagtacctggcagaagcccgtattgcttcc
gctgaggaagcggccaggcgcattatcgaggaagcccaaaaagaagcagatgccaaaaaa
agagaagcaatacttgaggcaaaagaagaaatccatcagatgcgcactgatgccgaacgg
gaaaacagggagaggcgtaacgaaatccagcgccaggagcggcgcttgttacagaaggaa
gaagcgctggacaggaaattagaaggcctggaaaagaaggaagagaacctgtataaaaag
gaacaggagcttgctcatagaagcagtcagctggacgagctgttgaaaaagcatgtggca
gaactggagcgcatctccggtttgacaacggaagaggcccggactattcttttgaataac
gtccgggaagaaattaaacgggaaacggctctcatcattaaagaagaagaggcgcgggcc
aaggaagaggccgataaacgggcaagggaaatagtgacgctggcgattcagaagggtgca
gccgacatagtagcagaaacgactgtgtccgttgttcctctacccaatgacgaaatgaaa
gggaggattatcggcagggaggggaggaacatcaggaccctggaaacattgactggggtt
gacctgataattgatgatactccggaggccgtgattctctccagttttgatccgattcgg
agggaaactgcccgcattgccctggaaaagctcattgcagacggtaggatccatccggcc
cggatcgaagagatggtggaaaaagcccagaaagagattgagcagaagatacgagaagaa
ggagaagaggctgcctttgaggtcggtgttcacaacattcatcccgagctgatcaagctt
ttaggtagacttaagttccggacaagctacggacagaatgtgctcaaacattccctggaa
gtagcttacctcgcaggcgccatggcctccgaactcggtgccaacgctcaactggcgaag
cgtgccggattgcttcacgacatcggcaaggcagtcgatcatgagattgaaggtcctcat
gttaccataggggctgatcttgcccggaaataccgtgaaaatccggaagttatccactgt
attctggctcaccacggggatcaggagccggaaaccgttgaggctgtgcttattcaggcc
gccgatgccatatcggctgcccgccccggtgcccgccgtgagacgctggaggcgtacttg
aagagactggataaactggaagaaatcgctgattcctttgaaggagtggagaaatctttt
gccattcaagcagggcgggaggtcaggatactggtcaagcccgaggtcatcgatgacatt
caggccgcgcacctgagccgggaaattgttaagaagattgaggacagcctggaatatcct
ggtcagatcaaggtgaccgtgatcagggaaaccaggtatgtggattacgcgaagtaa
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