Truepera radiovictrix: Trad_2113
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Entry
Trad_2113 CDS
T01254
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tra
Truepera radiovictrix
Pathway
tra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Trad_2113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tra03019
]
Trad_2113
03009 Ribosome biogenesis [BR:
tra03009
]
Trad_2113
Enzymes [BR:
tra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Trad_2113
Messenger RNA biogenesis [BR:
tra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Trad_2113
Ribosome biogenesis [BR:
tra03009
]
Prokaryotic type
rRNA helicases
Trad_2113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hera_RBD
DEAD
Helicase_C
ResIII
GUCT
ERCC3_RAD25_C
Sensor
Motif
Other DBs
NCBI-ProteinID:
ADI15226
UniProt:
D7CRD8
LinkDB
All DBs
Position
2289924..2291504
Genome browser
AA seq
526 aa
AA seq
DB search
MFHDLPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIAN
RLEPESARGRAPRALILTPTRELALQVAGELEWLAPEHNVVTVYGGTGYGKQASDLKRGA
DIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQERQTLLF
SATLPRWAESLAARHLRDPLRANVTSDESVSYDEVAIEAPLASRLGVLSDVLHVHGTGAS
IVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVATDVAARG
LDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERRELALLERAIARRI
ERAGAPRPQDVQRAKLAGLQRNLAAQRDDDRSAWRAVAQAWIDAKDVDALAGLLALTLGG
APAPRSLLTGEEGWTTLKLTGRPLSVPQTVRMLKQAGAGDIGRVQSARDGAYADLRPEEA
ERLGGEVEGLQIEEATYVEAPPADTRPRRPTRRPEGPRTRAPRYRA
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtttcatgacctccccttgcgggcgtccctatcgcgggcgctcgaggcgaagggcttt
tctacccctacgaccatccaagccgctaccttgccccacgcgctcgccggcggcgacgtg
cttggtttggcacgcaccggcaccggcaagacgctcgcttttggcctgccgatcgccaac
cgtctagagcccgagagtgcgcgcgggcgcgcgccgcgggcgctgatcctgacgcccacg
cgcgaactcgccctgcaggtcgcgggggagctcgagtggctcgcccccgagcacaacgtc
gtcacggtctacggcggcactggttacggcaaacaggcgagcgacctcaaacgcggcgcc
gacatcgtcgtcgccacccccggccgcgccgtggactactacaaacagggcgtcttgcag
ctttcgcgcgtcgaggtcgccgtcttggacgaagccgacgagatgctcaacgcgggcttt
gaagaggacgttgagctgctcctggccgcgaccccacaggagcgccagacgctgcttttt
tccgccaccttgccccgctgggccgaaagcctcgccgcgcggcacctgcgcgacccgctg
cgcgcgaacgtcacgagcgacgagagcgtctcgtacgacgaggtggcgatcgaagcgccc
ctggcatctcgcttgggcgtgctgagcgacgtgctgcacgttcacggtacgggggcgtcc
atcgtctttacccgtaccaaagccgaggtcgacgagctcgccaaggcgctcaccagcctc
ggccacctcgccgaagcggtccacggcgacctcaaccaggtgcagcgcgaacgggttttg
gagcgcttccgcgcctcacaggtgaccgttttggtggcgaccgacgtcgccgcacgtggc
ctcgatatccccgaagtcgacctcgtcgttcactaccgcttccccgagcagcccgagcgc
taccaacaccggagcggtcggaccggtcgcgcggggcgcgcgggcaccgtcgtgctgctc
tatagcccccgcgaacggcgcgagctggcccttttggagcgggctatcgcgcggcgcatc
gagcgtgccggcgccccccgcccccaagacgtgcagcgcgcgaagctcgccggtctgcag
cgcaacctcgccgctcagcgcgacgacgaccgctcggcgtggcgcgcggtcgcgcaagcg
tggatcgacgcgaaagacgtcgacgctctggcgggcttgctcgcgctcaccctgggcggc
gctcccgcaccgcgcagcttgctcacgggtgaggagggctggacgacgctgaagctcacc
ggccgccccttgagcgtgccgcagaccgtgcgcatgctcaagcaagccggcgccggcgac
atcggtcgcgttcagagcgctagggacggcgcctacgccgacttgcggccggaggaagcc
gagcggctggggggcgaggttgaaggtcttcagatcgaggaggccacctatgtcgaagcg
ccccccgccgacacccgccctcgccgccccacccgtcgccccgaggggccgcgcacgcgc
gcgccgcgctaccgggcgtaa
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