Tardiphaga robiniae: HB776_29085
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Entry
HB776_29085 CDS
T06738
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
trb
Tardiphaga robiniae
Pathway
trb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
trb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HB776_29085 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trb03021
]
HB776_29085 (rpoD)
Transcription machinery [BR:
trb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HB776_29085 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Dict-STAT-coil
Motif
Other DBs
NCBI-ProteinID:
QND74814
UniProt:
A0A7G6U732
LinkDB
All DBs
Position
6091174..6093303
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AA seq
709 aa
AA seq
DB search
MATKAKTLQTKDKEKDDKAADTPEKDSADAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQL
NDVLPSDTTSPEQIEDIMSMLSDMGINVSENEDSDGEEESKDEDDDTDNELVEVTQKAVT
EVKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQA
IIIWRDELNEGKIFLRDIIDLEATYAGPDAKNNMNPALIAPPTGDGEAVAEGAEAVAAPP
AAPPSATPFRPAPPRSAPAAAPAGESTSESAADGDMDDDEFENQMSLAAIEAELKPKVVE
TFDKIADSYKKLRKLQEQDIANQLESASQGPSLSPSQERKYKKLKDEIIVEVKSLRLNQA
RIDSLVEQLYDINKRLVSFEGRLLRLGDSHGVAREDFLRNYQGSELDPRWLNRVSKLSAK
GWKNFVAIEKDRIKELRGEIQQLAALTGLEIGEFRKIVHGVQKGEREARQAKKEMVEANL
RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA
DQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEP
LSLETPVGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFG
IGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcaaagacgctgcagaccaaggacaaggaaaaagacgacaaggcagct
gacacgccggagaaggactccgcagacgcgccgtcacctttgctcgacctgtccgacgct
gccgtcaagaagatgatcaagcaggccaagaagcgcggcttcgtgaccttcgatcagctc
aacgacgtcttgccatccgataccacctctcctgaacagatcgaagacatcatgtcgatg
ctctccgacatgggcatcaacgtttccgaaaacgaagactccgacggcgaggaagagagc
aaggacgaggacgacgataccgacaacgaactcgtcgaagtcacgcaaaaggccgtcacc
gaagtcaagaagtcggagcccggcgagcgcaccgacgatcccgtccgcatgtatctgcgc
gagatgggcaccgtcgagctgttgtcgcgcgaaggcgaaatcgcgattgcgaagcgcatc
gaggctggccgcgaggcgatgatcgcaggcctctgcgaaagcccgctgaccttccaggcc
atcatcatctggcgcgatgaactcaacgaaggaaagatcttccttcgcgacatcatcgat
ctcgaagcgacttacgctggccccgacgccaagaacaacatgaacccggcgctgatcgca
ccgcccaccggcgatggcgaagctgtggccgaaggcgccgaagccgtggctgcgccgccg
gctgcgccgccgtccgccacgccgttccgccccgcgccgccgcgttcggcgcctgctgct
gctcccgccggcgaaagcacgtcggaaagcgctgctgacggcgacatggacgacgacgag
ttcgagaaccagatgtcgctcgccgccatcgaggccgagctgaagccgaaggtggtcgag
accttcgacaagatcgccgacagctacaagaagctgcgcaagctgcaggaacaggacatc
gcgaaccagctcgagagcgcctcgcagggcccctcgctgtcgccgtcgcaggagcgcaag
tacaagaagctcaaggacgagatcatcgttgaggtgaagtcgctgcgcctcaaccaggcg
cgtatcgattcactcgtcgagcagctctacgacatcaacaagcgcctcgtctcgttcgaa
ggccgcctgctgcgcctcggcgacagccacggcgtcgcgcgcgaggacttcctgcgcaac
tatcagggctcggagctcgatccgcgctggctcaaccgcgtctcgaaactctcggccaag
ggctggaagaacttcgtcgccatcgagaaggaccgcatcaaggaactgcgcggcgaaatc
cagcagctcgcagccctcacgggtctcgagatcggcgaattccgcaagatcgtgcacggc
gtgcagaagggcgagcgcgaagcccgtcaggccaagaaggagatggtggaagccaacctc
cgtctcgtgatctcgatcgccaagaaatacaccaaccgcggcctgcaattcctggatctg
atccaggaaggcaatatcggtctgatgaaggccgtcgataagttcgaatatcgccgcggc
tacaagttctcgacctatgcgacctggtggatccggcaggcgatcacgcgttcgatcgcc
gaccaggcccgcaccatccgcattcccgtgcacatgatcgagacgatcaacaagatcgtg
cgcacctcgcgtcagatgctcaacgagatcggccgcgagccgaccccggaagagctcgcc
gaaaagctcggcatgccgctggagaaagttcgaaaagttctcaagatcgccaaggagccg
ctgtcgctcgaaacccccgtgggtgacgaggaagactcgcatctcggcgatttcatcgag
gacaagaacgcgatcctgccgatcgatgcggcgatccagtccaacctgcgcgaaaccacc
acgcgcgtgctggcctcgctgacgcctcgcgaagagcgcgtgctgcgcatgcgcttcggc
atcggcatgaacaccgaccacacgctggaagaagtcggccagcagttctcggtgacccgc
gaacgtatccgccagatcgaagccaaggcgctgcgcaagctgaagcacccgtcgcggagc
cgcaagctgcggtcgttcctggataactaa
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integrated database retrieval system
