Thermocrinis ruber: THERU_00375
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Entry
THERU_00375 CDS
T03001
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
trd
Thermocrinis ruber
Pathway
trd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THERU_00375 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trd03021
]
THERU_00375 (rho)
03019 Messenger RNA biogenesis [BR:
trd03019
]
THERU_00375 (rho)
Transcription machinery [BR:
trd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
THERU_00375 (rho)
Messenger RNA biogenesis [BR:
trd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THERU_00375 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
S1CSD-TOTE-2
NACHT
AAA_25
ATPase_2
DUF7440
Motif
Other DBs
NCBI-ProteinID:
AHE95361
UniProt:
W0DAV4
LinkDB
All DBs
Position
complement(61778..63070)
Genome browser
AA seq
430 aa
AA seq
DB search
MEETQVQERKLYSYEELKKMSFAELQKIGRELELRRVTGLRKEELIEDILQAQAQLEGLN
FVKGVLEILPEGYGFIRKQENNYMPSPGDVYVAPSQIKKFGLRTGDQIIGFARPPQDREK
YQALIRIESVCGLSPDPEILRSRPQFEKLTPFHPTERFNLETTPDELSTRVVSLIAPIGK
GQRGLIVAPPKAGKTVLLQKIAKALIQNHPEVYLIILLIDERPEEVTEMRRIVGDGAEVI
ASTFDEPPERHMQVAELVIEKAKRMVELKQDVVILLDSMTRFGRASNAVTPSTGRVLSGG
IEATALQRPKKFFGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEIHLDRK
LMERRIFPAINIEKSGTRKEELLLEEWELQRVWVLRKFLATMDPVEAMEFLLDKLKKFKT
NKDFLKAMHS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaacccaagttcaggagaggaaactttactcctacgaagagttaaagaagatg
tcctttgcagaactacaaaagatcggcagggagcttgagctgaggcgtgtcactggtctc
agaaaggaggagctcatagaagacatactccaagctcaagcccagttggagggtttgaac
ttcgtaaagggtgttttggagattctgccggagggttatggctttatcagaaaacaagag
aacaactacatgccaagtcctggggatgtttatgtggcaccttcccagattaaaaagttt
ggactgaggacgggagaccagatcataggttttgcaagaccaccgcaagatagagaaaag
tatcaagccctaattaggatagagtccgtgtgtgggcttagcccagacccagagatccta
cggtcaagacctcaatttgaaaagctaacacccttccatcccaccgaaaggttcaatctt
gaaaccacaccggatgagctatccacaagggtagtcagccttatagcacccataggcaag
ggtcaaaggggtctcatagtagcaccaccaaaggcaggaaaaacggtccttcttcaaaag
atcgctaaagctctaatacagaatcatccagaggtctatctaataatcctgctcatagac
gaaagaccggaagaggttactgagatgaggaggattgtgggagatggggcggaggttata
gcttccacctttgacgagccaccagaaaggcacatgcaggtggcggagcttgtcatagaa
aaggcaaagagaatggtggagctaaagcaggatgtggtgatcctcttggactctatgaca
cgcttcggcagggcttccaacgcagtaactccttccacgggtagagttctctccggtggt
atagaggcaaccgctttgcaaagacctaaaaagttctttggtgctgcaagaaacattgaa
gagggaggttctttaaccatcatagccactgccctcatagaaacgggctcaaggatggac
gatgttatctacgaagaatttaaaggcactggaaacatggagatccatcttgacagaaag
ctcatggaaagaagaatattcccagccatcaacatagaaaagtctggcacccgcaaggag
gagctactcttggaagagtgggaattgcagagggtttgggtgctcagaaagttcttggcg
accatggacccggtggaggcgatggagttccttttggacaagctcaaaaagttcaaaacc
aacaaagattttctaaaggcgatgcactcttaa
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