Thermocrinis ruber: THERU_06610
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Entry
THERU_06610 CDS
T03001
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
trd
Thermocrinis ruber
Pathway
trd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THERU_06610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trd03019
]
THERU_06610
03009 Ribosome biogenesis [BR:
trd03009
]
THERU_06610
Enzymes [BR:
trd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THERU_06610
Messenger RNA biogenesis [BR:
trd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THERU_06610
Ribosome biogenesis [BR:
trd03009
]
Prokaryotic type
rRNA helicases
THERU_06610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
AAA_19
Flavi_DEAD
UvrD-helicase
HEM4
AAA_30
ERCC3_RAD25_C
DAGK_cat
Helicase_C_2
Helicase_RecD
adh_short
Shikimate_DH
NACHT
UvrA_inter
Hydrolase
PRAI
Motif
Other DBs
NCBI-ProteinID:
AHE96390
UniProt:
W0DHN2
LinkDB
All DBs
Position
complement(1195769..1196872)
Genome browser
AA seq
367 aa
AA seq
DB search
MEFDFSQLSEPVRRALKDLGFEKPTPIQKEAIPLALKGYDILGQAATGTGKTAAFGIPII
EKVKKEEGLKALILTPTRELAIQVKEQLQELAKYKGLRVSVFYGGTPVAGNIEFLAKYTH
NIVVGTPGRIKDLINRSALDLSNVSYFVLDEADLMLDMGFIEDVEEIISHIPTQRQSFMF
SATIPRQVEELARKYLREDYKLVRVINAELKPKIEERLIRLSSPAQKLSELEKLLREHLL
EKVIIFVKTRKDAKELAEKLKAKNFKVVALHGDMTQRQRENALRLFKDGKVRIVVATDVA
SRGLDIKGVGVVINYHIPEDPEVYIHRIGRTGRIGNYGKAYSFATPEDSRALWRIKKLKE
NQKSLGL
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atggaatttgatttttcgcaactgagcgaaccagtgaggagggcgcttaaagatttgggg
tttgagaaacccacacctatacaaaaggaagcaatacccttagcactcaagggctacgat
attttgggacaggcggcaacgggcacaggcaagaccgcagcctttggcatacccataata
gaaaaggtaaaaaaggaagagggtttaaaggcgctcatacttactcccacccgggagctt
gccattcaggtaaaggaacaactgcaagagcttgccaagtataagggtctgagggtatct
gtcttttacggtggaacacccgtggcgggcaacattgagtttttagcaaaatacacccac
aacatagtggtgggaacgcccggcaggatcaaggaccttataaaccgttccgctttggac
cttagcaatgtttcttactttgtccttgacgaggcggaccttatgcttgatatgggcttt
attgaggatgtggaggagataatttcccatatccctacccaaaggcaaagttttatgttc
tccgccaccataccaaggcaggtggaagagcttgcgagaaaatacttaagggaagactac
aagttggtgagagtgataaacgctgaactaaagccaaagatagaggaaaggttaataagg
cttagctctcctgcgcaaaaactttcagagttggaaaagcttctaagggaacatcttttg
gagaaggtgatcatctttgttaaaactcgcaaggatgcaaaggaattggcagaaaagcta
aaagccaagaactttaaagtggttgccttgcatggagatatgacccaaaggcagagggaa
aatgcccttaggctctttaaggatgggaaggtaagaattgtggtggctaccgatgtggca
tcaagaggattagatataaagggtgtaggtgtggtgatcaactaccatatacccgaagac
ccagaggtatatatccaccgcataggtagaactggaagaattgggaactacgggaaagct
tacagctttgcaacgcccgaagacagccgggcactgtggaggataaaaaaacttaaggaa
aatcagaaaagcttagggttataa
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