Thermocrinis ruber: THERU_07970
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Entry
THERU_07970 CDS
T03001
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
trd
Thermocrinis ruber
Pathway
trd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
trd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THERU_07970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trd03021
]
THERU_07970
Transcription machinery [BR:
trd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THERU_07970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r4_2
HTH_WhiA
ATP-cone
ClpB_D2-small
Motif
Other DBs
NCBI-ProteinID:
AHE96631
UniProt:
W0DE52
LinkDB
All DBs
Position
complement(1430103..1431038)
Genome browser
AA seq
311 aa
AA seq
DB search
MIPDSEQELIAQYLKKVSKIPLLKPEEEKELARRAKEGDKEAYRKLVESNLRFVISIAKQ
YLGYGLRLSELIAAGNYGLMEAAKRFDPDKGVKFISYAVWWIRQAIMQALSQQTGAVRIP
LKQSHLINKINSIYSKLYKEYEREPTAEEVAEEYTKEILQKEMERELGRRPTEEEIQRRI
EKEGYKIDPAEVERILQISKMPLSLDAPVGEEEDTFFVDFLSKHGTADVEEKVMNEILSK
EIEEMLDKLPEKERRVIELRFGLRGEEPKTLREIGEILNISRERVRQLETRALRKLRNMA
IKKHLKDFLSG
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgattccggacagcgaacaagaacttatagcccaatacttaaagaaggtttcaaaaata
cccctcctaaagcccgaggaggaaaaggagctggcaagaagggcaaaggagggagacaag
gaggcttacagaaagctagtagaatcaaacctgcgttttgttataagcatagcaaagcag
tatctgggttatggacttcgtctttcagagttgatagcagcgggtaattatgggcttatg
gaagcggcaaagaggtttgaccccgacaagggtgttaagttcatatcttacgcagtttgg
tggatcaggcaagctataatgcaagccctatctcaacagactggtgcggtgcgcatacct
ctaaaacagtcccatctgatcaataagatcaacagtatatacagcaagctatacaaggaa
tacgagagggaaccaacagcggaggaggtagcagaggaatacaccaaggagatcttgcaa
aaggaaatggaaagggaactgggaaggagacccacagaggaggaaatccaaaggagaata
gaaaaagagggctacaagattgatcctgcggaggtggagaggattctgcaaatatccaaa
atgcccttgtcccttgatgcacccgttggagaggaggaggatactttctttgtggatttt
ctcagtaagcatggcactgccgatgtggaagaaaaggtaatgaacgaaattctgagcaaa
gaaatagaggaaatgctggataaactgccggaaaaggaaaggcgagtgatagagctcagg
tttggattgaggggagaagagccaaaaacattgcgggagataggagagatattaaacatt
tcaagggaaagggtcaggcagttggaaacaagggctctaagaaaactaagaaacatggca
ataaaaaaacatctaaaagactttctaagcggatga
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