KEGG   Trichoderma reesei QM6a: TRIREDRAFT_108090
Entry
TRIREDRAFT_108090 CDS       T02991                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tre  Trichoderma reesei QM6a
Pathway
tre03018  RNA degradation
tre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TRIREDRAFT_108090
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TRIREDRAFT_108090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tre03019]
    TRIREDRAFT_108090
   03041 Spliceosome [BR:tre03041]
    TRIREDRAFT_108090
Messenger RNA biogenesis [BR:tre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TRIREDRAFT_108090
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     TRIREDRAFT_108090
Spliceosome [BR:tre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    TRIREDRAFT_108090
SSDB
Motif
Pfam: LSM SpoU_sub_bind SM-ATX
Other DBs
NCBI-GeneID: 18481592
NCBI-ProteinID: XP_006965973
JGI: Trire2_108090
UniProt: G0RLE3
LinkDB
Position
Unknown
AA seq 152 aa
MLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVY
VKGNNIKYLRVPDEIIDQVTEQQKNQQGGFRGGRGGGAHHQSRGGDHHHSGGGDRRGGGG
GGDRGRGGRGGGRGRGGRGRGGQFRLHGGTAR
NT seq 459 nt   +upstreamnt  +downstreamnt
atgcttcccctcggattgctcaacgccgcccaaggccaccccatgctggtcgaactcaag
aacggagagactctgaatggacacctggtcatgtgcgatacctggatgaacctcaccctc
aaggaggtcgtccagacgagcccggaaggcgataagtttatgcgtctcccagaagtctat
gtcaaaggcaacaacatcaaatatctccgcgtccccgacgaaatcatcgaccaagtaacc
gaacagcaaaagaaccaacaaggcggcttccgcggcggtcgcggcggcggcgcccaccac
cagtcaagaggcggcgatcatcaccactccggcggcggcgaccgccgaggaggcggtggt
ggtggtgacaggggacgcggcggacgcggcggaggcagagggcgtggtggacggggacgc
ggtggccagtttagattacatggaggcactgcgcgttga

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