Trichoderma reesei QM6a: TRIREDRAFT_112413
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Entry
TRIREDRAFT_112413 CDS
T02991
Symbol
rhp3
Name
(RefSeq) DNA excision repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
tre
Trichoderma reesei QM6a
Pathway
tre03022
Basal transcription factors
tre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TRIREDRAFT_112413 (rhp3)
09124 Replication and repair
03420 Nucleotide excision repair
TRIREDRAFT_112413 (rhp3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tre03021
]
TRIREDRAFT_112413 (rhp3)
03036 Chromosome and associated proteins [BR:
tre03036
]
TRIREDRAFT_112413 (rhp3)
03400 DNA repair and recombination proteins [BR:
tre03400
]
TRIREDRAFT_112413 (rhp3)
Enzymes [BR:
tre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TRIREDRAFT_112413 (rhp3)
Transcription machinery [BR:
tre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TRIREDRAFT_112413 (rhp3)
Chromosome and associated proteins [BR:
tre03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
TRIREDRAFT_112413 (rhp3)
DNA repair and recombination proteins [BR:
tre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TRIREDRAFT_112413 (rhp3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
SNF2-rel_dom
DUF365
AAA_11
nSTAND3
HsdM_C
AAA_25
DUF5667
Motif
Other DBs
NCBI-GeneID:
18482558
NCBI-ProteinID:
XP_006969773
JGI:
Trire2_112413
UniProt:
G0RX04
LinkDB
All DBs
Position
Unknown
AA seq
783 aa
AA seq
DB search
MKFNIDNLPVLFPYPRIYPETLDAGGHCVLEMPSGTGKTVSLLSLIVAYQQHMPEKRKLI
YCSRTMSEIEKALVELQSLMKYRTEQLGYEEEFRGLGLTSRKNLCLHPSVKREKSGSIVD
ARCRSLTAGFVKEKKDRGENVDVCVYHDNLDLLEPHNLIPNGVWSFDALLRYGEEHKQCP
YFTARRMMEYCNVVIFSYHYLLDPKIAERVSKDFSKDCIVVFDEAHNIDNVCIEALSTDI
TEDSIRKATRSAQHLERRIAEMRETDQEQLQNEYEKLVQGLRAADESRQEDAFMANPALP
DDLLKEAVPGNIRRAEHFVAFLKRFLEYLKTRMKVRQVISETPPSFLAHLKEHTFIEKKP
LRFCAERLTSLVRTLELTNIEDYQALQEVATFATLVATYEKGFLLILEPYESDTAEVPNP
TLHFTCLDAAIAIRPVFERFYSVIITSGTISPLEMYPKMLDFATVIQESYSMTLARKSFL
PMIVTRGSDQASISSSFQVRNEPSVVRNYGSLLTEFAKITPDGMVVFFPSYLYMESIISM
WQGMGILDEVWKYKLILVETPDAQETSLALETYRTACCNGRGAILLCVARGKVSEGIDFD
HQYGRTVLCIGVPFQYTESRILKARLEFLRETYRIKENDFLSFDAMRHAAQCLGRVLRGK
DDYGVMVLADRRFQKKRNQLPKWINQGLSDADTNLSTDMAVSAARRFLKTMAQPFRSKDQ
EGISTWGYEDLLRHQKKMEEERGEEPPPVLANARGQAHGSIAAGYESDYGDIDADMMELE
GFE
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcaatatagacaatctccccgtgttatttccttacccaaggatatatccagaa
acgctcgatgcgggcggtcactgcgtgctggagatgccgtcagggaccggcaagacggtg
tcactgctgtctctcattgttgcatatcagcagcacatgcccgagaagcggaagctcatc
tactgctcccgaaccatgtctgagattgaaaaggccctggtcgagctgcagtctctgatg
aagtatcgcaccgagcagttggggtacgaagaggagtttcgcggccttggcctgacaagt
cgcaagaacttgtgtcttcacccctccgtcaagagggaaaagagtggctcgattgtcgac
gctcgctgccggagtctaactgcagggtttgtcaaggagaagaaggaccgaggtgaaaat
gtcgatgtctgtgtctatcacgataaccttgatctgctcgaaccacacaacctgataccc
aacggcgtatggtcctttgatgcactgttacgatacggagaggagcataagcagtgcccc
tatttcactgcgcgacgcatgatggaatactgcaatgtagtcatcttctcctatcactac
ctcctagatcccaagattgcagagcgtgtctccaaagacttttccaaggactgcattgtg
gtgtttgacgaagcccacaacatcgacaacgtctgcatcgaggcgctcagcaccgacatt
accgaagactcaatacgcaaagcgacccgcagcgctcagcatctcgagcggagaatcgcc
gagatgcgggagacggatcaggagcagctccaaaacgaatacgagaagcttgttcagggg
cttcgcgcggcagatgagtcgaggcaggaggatgcctttatggccaatccagccttgccg
gatgaccttttgaaagaggctgtgccgggcaacatcaggagagcagaacatttcgtggcc
tttttgaagcgattcttggaatatctcaagacgcgaatgaaagttcggcaagtcatctcg
gaaacaccaccgtcgtttctggcccatctgaaagagcacacattcatcgaaaagaagccg
ctgcggttctgtgccgagcggctgacatcacttgtccggaccctggaacttacgaatatc
gaagactaccaagcactccaagaagtggcaactttcgcaacgctcgttgcaacctacgaa
aagggcttcctgttgatcctggagccgtacgagtccgacacggcagaagtgccaaacccc
acgcttcacttcacctgtctcgatgcggccattgccatccggcctgtgtttgaaaggttc
tactcagtcatcataacgtctggaacgatttcccccctcgaaatgtaccccaagatgctg
gactttgcgacagtcatacaagagtcctacagcatgacgctcgcccggaaatctttcctc
cccatgattgtgactcgagggagcgaccaggcttccatctcgtcgagctttcaagttcga
aacgagccgagcgttgtccgcaactacggcagcctcttgaccgaatttgccaagatcacg
cccgacggcatggtggtcttcttcccgtcgtacctgtacatggagtccatcatcagcatg
tggcagggcatgggcatcctcgacgaggtgtggaagtacaagctcatcttggtcgagacg
cccgacgcacaggagacgtcgctggcgctggagacgtaccggacggcctgctgcaacgga
aggggggccatcctgctctgcgtcgcgcgaggcaaagtatccgagggcatcgactttgac
catcagtacggccggacggtgctgtgtatcggcgtgccgttccagtacacggaatcacgc
atcctcaaggctcggctcgagttcctgcgggaaacgtaccgcatcaaggaaaacgacttc
ttgtcgtttgacgccatgcgccacgccgcgcagtgcctgggccgcgtcctccgaggcaag
gacgactacggcgtcatggtgctcgccgaccgacggttccagaagaagaggaaccagctg
ccgaaatggatcaaccagggcctgtcggacgccgacaccaacctgagcacggacatggcc
gtcagcgccgcccgccggttcctcaagaccatggcgcagccgttccggagcaaggaccag
gagggcatcagcacctggggctacgaggatctcctgcggcaccagaagaagatggaggag
gagaggggagaggagccgccgcctgtgctcgccaatgcgaggggccaggctcacggtagc
atagctgctgggtatgagtcggactatggagacattgatgccgatatgatggagctggaa
ggctttgagtga
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integrated database retrieval system
