Trichoderma reesei QM6a: TRIREDRAFT_49059
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Entry
TRIREDRAFT_49059 CDS
T02991
Name
(RefSeq) nuclear exosomal RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tre
Trichoderma reesei QM6a
Pathway
tre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRIREDRAFT_49059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tre03019
]
TRIREDRAFT_49059
03041 Spliceosome [BR:
tre03041
]
TRIREDRAFT_49059
03009 Ribosome biogenesis [BR:
tre03009
]
TRIREDRAFT_49059
03016 Transfer RNA biogenesis [BR:
tre03016
]
TRIREDRAFT_49059
Enzymes [BR:
tre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRIREDRAFT_49059
Messenger RNA biogenesis [BR:
tre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
TRIREDRAFT_49059
Spliceosome [BR:
tre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TRIREDRAFT_49059
Complex C
U4/U6.U5 tri-SnRNP related factors
TRIREDRAFT_49059
Ribosome biogenesis [BR:
tre03009
]
Eukaryotic type
Pre-60S particles
Helicases
TRIREDRAFT_49059
Transfer RNA biogenesis [BR:
tre03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
TRIREDRAFT_49059
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
DEAD
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
AAA_16
Helicase_dom4_arc
Glyco_hydro_65C
Motif
Other DBs
NCBI-GeneID:
18485234
NCBI-ProteinID:
XP_006966062
JGI:
Trire2_49059
UniProt:
G0RLR6
LinkDB
All DBs
Position
Unknown
AA seq
1098 aa
AA seq
DB search
MDEMFDVFEGKAEPPSASEDERVPQRSRSRAQSKKRKADEAMNGNADADMDGTNDDADTG
MADAAETSRDEASEGEDDSEAPDHQDKKRRKKTDEAGPVMTDNFQTAESREVAGASTFVS
QDSSLVLSHNIQHQVALPPDLNYEYIPLSEHKSPEEPARTYPFKLDPFQSLSVASIEREE
SVLVSAHTSAGKTVVAEYAVAQCLKRNQRVIYTSPIKALSNQKYRDFEAIFGDVGLMTGD
VTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIIMLPD
KVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFYPMGGKGARMVVDER
GTFNEENFNLVMAEVEEKKGSDPADFNAKMKGKGKNKKTNKGGADEGSDINKIIRMTVRK
NFNPVIVFNFSKRECENMALKISNLNFNDDSEKAMVNKVFQSAIESLSEADRELPQIQNL
LPLLQKGVGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVVFTQVTKW
DGVQRRPITSSEYVQMAGRAGRRGLDARGVVIMMIDDKLEPEVAKQIVTGQQDRLNSAFY
LGYNMILNLLRIEAISPEFMLERCFHQFQNAASVPALEKDLMALQQEKDALTIPDEATVK
DYYTIRQQLNTYTKDMRAVIQHPNYCLPFLQPGRLVQIHNVKESAEKLGGGLDFGWGVIT
DQYARRPPKLGEPEYPPQESHIIEVLLYISKSSADIIPGHLAGDIPPGLKPAADEDDGMF
AVVPCLLTCIKAISQIRVFMPKDGLKSDDDRRDAGKALSEVQRRFPDGVPILDPLENMDI
TDESFKQLLRKIEVLESRLVANPLHLSPLLPSLWDQYHAKVQILDKIKEKKKEIAKAHSI
AQMDELKSRKRVLRRLGFINDAEVVQLKARVACEISSTEGHELLLSELLFDRFFNEMTPE
LIAAVLSCFVFDEKLEAQALKEELQKPFREIQAKARMIAKVSQESKLDVNEDQYVQSLKW
QLMETVYAWAQGRTFAEICKMANVYEGSFIRIFRRLEELIRQMAQAAKVMGNDDLMKKFE
ESLQKIRRDIVAAQSLYL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatgtttgacgtgttcgagggcaaggcggagccccccagcgccagcgaagac
gagagagtgccccagaggagtcgcagccgagcccagagcaagaagcgaaaggccgacgag
gccatgaacggaaatgccgacgccgacatggacgggaccaacgacgacgccgacaccggc
atggctgatgccgccgagacgtcccgagacgaggcctccgagggcgaggacgactctgag
gcgcctgatcaccaggacaagaagcggcgcaagaagacggacgaggccggcccggtcatg
acggacaacttccagacggcagagtcaagagaggtcgcgggcgcctcgacgtttgtgtcg
caggactcatcgctcgtgctgtcacacaacatccagcaccaggtcgccctgccgccggat
ctcaactacgaatacattcccctctcagagcacaagtcccccgaggagccggcgcggaca
taccccttcaagctggatcccttccagagcctgtctgtcgcatcgattgagcgcgaagag
agcgtcctggtatcggcgcatacaagtgccggaaagacggtggtggcagagtatgcggtt
gcgcagtgcctcaagcgcaaccagagggtcatctacaccagtcccatcaaggccttgagt
aaccagaaatatcgagacttcgaggccatcttcggcgacgtgggcctgatgacgggtgat
gtcaccatcaatcccacggccagctgcctggtcatgacgacggagattttgcggtcgatg
ctgtaccgcggttcggagattatgcgcgaagtggcctgggtcgtgtttgacgagatccac
tacatgcgagacaagacgcgaggcgtggtgtgggaggagaccatcatcatgcttcccgac
aaggtccgatatgttttcctctcggccaccattccgaacgccttccagttcgccgaatgg
attgccaagatccaccaccaagcgtgtcacgtcgtctacaccgatttcagacctacccct
ctacaaaactacttttaccccatgggaggaaagggcgcgagaatggtggttgacgagagg
ggcaccttcaacgaggagaactttaaccttgtcatggcagaggtggaagagaagaagggc
tccgatccggccgacttcaacgccaagatgaaaggaaaaggaaagaataagaagacgaac
aagggcggcgccgacgagggctccgacattaacaagatcattcggatgacggtcaggaag
aacttcaaccccgtcattgtgttcaacttctccaagcgggagtgcgagaacatggccctc
aagatctccaacctcaacttcaacgacgattcggaaaaggcaatggtcaacaaggtcttc
cagagtgctattgagagcttgtcagaagcggaccgcgagctgccgcagatccagaacctc
ctaccattgctgcaaaagggcgtcggcgtccatcactcgggtcttctgcccattctcaag
gagacgatcgagattctgttccaggagtccttgatcaaggttctctttgcgaccgagacc
ttttctatcggcctcaacatgcctgccaagaccgtcgtcttcactcaagtcacaaagtgg
gacggtgtccagagacgccccatcacctcttccgaatacgttcagatggcgggacgtgct
ggtcgtcgtggcctcgatgcccgcggtgtggtcatcatgatgattgacgacaagctcgag
ccagaggtggccaagcagattgtcaccggtcagcaagacagactcaactcggccttttac
ctcggatacaacatgatcctcaacctgctccgaatcgaggccatctcacccgagttcatg
ctggagcgatgcttccaccagttccagaatgcggctagcgtccctgccctggagaaggac
ctgatggcgctgcagcaggagaaggacgctctcacgatacccgacgaggccactgtcaag
gactactacacgatccgacaacagctcaacacgtacaccaaggacatgcgagcggtcatt
cagcacccaaactactgccttccctttttgcaacccggccgccttgtccagatccacaac
gtcaaggagtcggcggagaagcttggtggtgggctcgactttggctggggcgtcataacc
gatcagtatgcgcgacgaccccccaagctgggcgagcccgaatacccgcctcaggagtct
cacatcatcgaggtcctcctgtacatttccaagtcgagcgccgacatcatccccggccac
ctggctggcgacataccgcccggcctgaagccggcagccgacgaggacgacggcatgttt
gcggttgtcccctgtctcctcacctgcatcaaggccatcagccagattcgcgtcttcatg
cccaaggacggcctcaagtccgatgacgaccgtagagatgctggcaaggcgcttagcgaa
gtgcagcgccgcttccccgacggcgtgcccattctggacccgctggagaacatggacatt
acggatgaatcgtttaagcagcttctccgcaagattgaagtgctcgagtccaggcttgtg
gcgaaccctctgcatctctcgcccttgctcccgtcactgtgggaccagtatcacgccaaa
gtgcagatcctggacaagatcaaggagaagaagaaggagattgccaaggctcacagcatt
gcgcagatggacgagctcaagtcgcgcaagcgtgtgctgcgtcgtttgggattcatcaac
gatgccgaagtcgtccagctcaaggcccgcgtcgcctgcgagatctcctccactgagggc
cacgagctgctcctgtccgagctcctctttgatcgcttcttcaacgagatgacgcccgag
ctgattgccgctgttctcagctgcttcgtctttgacgagaagctggaggcccaggcgctc
aaggaggagctgcagaagcccttccgtgagatccaggccaaggcccgcatgattgccaag
gtcagccaggagtctaagctggacgtcaacgaggaccagtatgtgcagagcttgaagtgg
cagctcatggagactgtgtatgcatgggcacagggacgaacctttgctgagatttgcaaa
atggccaacgtgtacgaaggctcatttatccgcatcttccgccgtctcgaggagctcatc
cgacagatggcccaggccgccaaggtcatgggcaatgacgacctcatgaagaagtttgaa
gagtctctgcagaagattcggagagacattgtggccgcccagagcttgtacctgtaa
DBGET
integrated database retrieval system
