Trichoderma reesei QM6a: TRIREDRAFT_79315 Help Entry TRIREDRAFT_79315  CDS       T02991                                  Name (RefSeq) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism tre  Trichoderma reesei QM6a Pathway tre03020   RNA polymerase tre03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:tre00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     TRIREDRAFT_79315   09124 Replication and repair    03420 Nucleotide excision repair     TRIREDRAFT_79315  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tre03021]     TRIREDRAFT_79315    03400 DNA repair and recombination proteins [BR:tre03400]     TRIREDRAFT_79315 Enzymes [BR:tre01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      TRIREDRAFT_79315 Transcription machinery [BR:tre03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      TRIREDRAFT_79315 DNA repair and recombination proteins [BR:tre03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       TRIREDRAFT_79315 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R UNC80_N MafB Motif Other DBs NCBI-GeneID:  18489007 NCBI-ProteinID:  XP_006966645 JGI:  Trire2_79315 UniProt:  G0RMT8 LinkDB All DBs Position Unknown AA seq 1755 aa AA seqDB search MANLYFTHSSAPLKTVQEIQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLL GSIDRQFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADES DPEFVAAINTRDAKLRFKRVWAVCKKKRRCENDDRSEKNKDEEFAPGMKPAVVESHGGCG NVQPQVRQVALQLKAAFEVVQEDGPKRKETAPITPEMAHSILRRISEKDLRNMGLNSDYA RPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQ HIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD FSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVI RSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYS TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMGIVQD SLAGAYKLCRRDTFLDKNQVMNLMLWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPKEI SLHAPEDKSDSPLKDAGLLIQAGELMYGLMKKKNIGSASGGVIHLCYNELGPEGAMAFLN GVQQVVTYWLLQNGHSIGIGDTIPDKQTIEKVQVHIDTQKAEVARLTAMATNNELEALPG MNVRATFENKVSMALNMARDQAGTTTQKSLKDSNNAVTMAESGSKGSSINISQMTALVGQ QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDT AVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFLYGEDGLDAMCIEKQKLGILK MSDEAFEKKYRLDLANPPDWFRKDYEYGNELTGDKASMALLDEEWDQLLADRREVREINR SKMGEEMMQLPLNIGRMIETAKRVFNVKANDRSNLRPSDVIPVVRNVINKLKIVRGEDQI SKEADTSATILFKALLRSRLAFKEVVKEHRLNKLAFEHVLGELQNRWDRSFVNPGEMVGV LAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKNIKTPSMAVYLDTPLAK QEQAKKLRSLVEYTNLRSITSVTEIYYDPDVQSTTIPEDLDMVESYFLIPDDSQDTIDQQ SRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSDNNADEQVIRIRTIRQDEK DEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLVEAADGSELALKDDPR CTQWYLDTSGSALREVLAVPGVDPTRTYTNDLWQIIEVFGIEGTRAALVKELTAVLAFDG SYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDD CRGISENVMLGQMAPMGTGNFDVYLDPKMLETVISDNSRMGLMPGMPVKEGDVEGAATPY DTGSPMGDSGYLSLNSPAAGNFSPIQGAGSETPAGFGTEYGGGGFGGIGSMSPYSMRGAT SPFSTSPTSPFSSGMGGYSPTSPNAGYSPTSPMIDGGIGRYATSPSFSPSSPSFSPTSPM LRPTSPASPNYSPTSPSYSPASPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLH GVGATSPSYSPASPSWSPTSPEAYSPTSPSFSKSPGSQQSPTSPSYSPTSPSFSPRTPGP GASGNQYSPNSPAND NT seq 5268 nt NT seq  +upstreamnt  +downstreamnt atggcgaacctctacttcacgcactcgagcgctccgctcaagacggtgcaggagattcag tttggtctcatgtctcccgaggagatcaagagcatgagcgtggcccacattctgtacccg gagacgatggaggaaggcggcacaaagccgcgcgatggtggcctcaacgatcctctcctc ggctccatcgaccggcaattcaagtgcaagacgtgcacgcaggcaatgggcgagtgccct ggccactttggtcacatcgaactggccaagccggtgtaccaccctggcttcatcaagaaa gtcaagaagatcttggaaattgtctgccacaactgtagcaaggtcctggctgatgaaagc gatcccgagtttgtcgcagcaatcaatactcgagatgcaaaactccgcttcaagcgggta tgggccgtctgcaagaagaagcggaggtgtgagaatgacgaccggtcagagaagaacaag gacgaggagtttgcgcccggcatgaagccagccgtcgtcgaaagccacggcggctgcggc aatgtgcagcctcaggttcgacaggtcgctctccagctcaaggccgccttcgaggttgtc caagaggatggtcccaagcggaaagagacggctcccatcaccccagagatggcccatagc atccttcgccgcatctctgagaaggatctgcgcaacatgggtctcaactcagattacgcc cgtccggagtggatgatcatcaccgtcctgcccgtgcccccaccaccggtccgtcctagt atctccatggatggtactggaaccggaatgcgtaacgaagacgacttgacctacaaactt ggtgatatcattcgcgccaatggcaatgtcaagcaggctatccgtgagggctcccctcag catatcgccagagatttcgaagagctgctgcaataccacgttgccacctacatggacaac gacattgctggccagccccgtgcgctgcagaagagtggccgtccggtcaaggccattcgt gcccgtctcaagggaaaggagggccgcctgagaggcaatctgatgggaaagcgtgttgac ttttctgctcgtacagtcatcacgggagacgccaacctgtctctgcacgaagtcggtgtt cctcgcagtattgctcggaccctgacctaccccgagacagtgacgccttacaacattggc aagttgcatcaactggtcgagaacggtcccaatgagcatcctggagccaagtacgttatc agatccgacgggacccgtatcgacctgcgacaccacagacgagcggctcaaatttctctc gagtatggctggaaggttgagcgtcatcttatggacggtgattatatcatcttcaaccgt caaccctcgcttcacaaggagtccatgatgggtcaccgtgttcgcgtcatgccttactcc actttccgactcaatctgtcggtgacttctccttacaacgccgatttcgatggtgacgag atgaaccttcacgtaccgcaaagcgaagagactcgtgcagaagtcaaggagctttgcctg gttcctaacaacatcgtttcgcctcagaaaaacggcccactgatgggtatcgttcaggac tcgctcgctggcgcctacaagctctgtcgtcgtgacaccttccttgacaagaatcaggtc atgaacctcatgctctgggtccctaactgggacggtgtcattccccagcccgccatcctg aagccgagaccgcgctggaccggcaagcagatcatcagcatggtcatccccaaggagatc agcctgcacgctcccgaagacaagtctgactctcctctcaaggatgctggcctcctcatt caggctggtgagcttatgtacggtctcatgaagaagaagaacattggttctgcctctggt ggtgtgatccatctctgctacaacgagctgggcccagaaggtgccatggcgttccttaac ggggttcagcaagtggttacctactggctgctgcagaacggccacagcattggtatcggt gataccattccggataagcagacgattgagaaggtccaggtgcacattgacacccaaaag gccgaggtcgccaggcttacggccatggctacaaacaacgagttggaagccttgcctggt atgaacgtccgagcgacctttgagaacaaggtctccatggctcttaacatggctcgtgac caagctggtactacgacccagaagagtttgaaggactccaacaacgccgtgaccatggcc gagtccggttcaaagggatcgtccatcaacatttctcagatgacagcgctcgtgggacag cagattgtcgaaggaaagcgtattccgtttggcttcaaatatcggactctgccccatttc accaaggatgattactcacccgaggctcgtggttttgtggagaactcgtacctgcgtggc cttacgccgaccgagttcttcttccacgccatggctggtcgtgaaggtctcattgatacg gccgtcaagacagccgagacaggttacattcagcgacgtctggtcaaggctctggaagat ctcaatgctcagtacgatggtacggtgcgcaactctcttggtgatatcattcagttcctc tacggcgaagacggtctcgacgctatgtgcatcgagaagcagaagcttggcatcttgaag atgtctgacgaggcgtttgagaagaagtatcgccttgatctggccaacccgccagactgg ttcagaaaggactacgagtatggcaacgagttgactggtgacaaggcctccatggctctg ctcgacgaagagtgggatcaacttctggccgaccgccgcgaagtacgggagatcaatcgc tcaaagatgggcgaggaaatgatgcagcttcctctcaacatcggccgcatgatcgaaacc gccaagcgcgtcttcaacgtcaaggccaacgaccgaagcaatttgagaccttcggatgtc attcccgttgtgaggaacgtcatcaacaagctcaagattgtgcgaggcgaggatcagatt tcgaaagaggcggatactagtgccaccatcctcttcaaagctcttcttcgatctcgactg gccttcaaagaggtggtcaaggagcatcgcctgaacaagttggcatttgagcatgttctc ggagagcttcagaaccggtgggaccggtcgtttgtcaaccccggtgaaatggtgggtgtc ctcgcggctcagtccatcggtgagcctgctacgcagatgactctgaacaccttccacttt gctggtgtgtcctccaagaacgtcacgctcggtgtgccccgtctcaaggaaatcctcaat cttgcaaagaacatcaagacgcctagtatggcagtttatctggacactccgttagccaag caggagcaagcgaagaagctgcgaagtctggtcgagtacaccaatctgcggtctattact tccgtcactgagatctactacgacccagacgtccagtctacaaccattccggaggatctc gacatggtcgagtcctacttcttgattcctgacgacagccaagacaccatcgatcagcag tcgaggtggcttttgcgcatcacgctcgacaggcagaagctgcttgacaaggaaatcaag atcgacgacgtcgcccaacgcatcaaggaagagtatcccaatgatctggccgtcatcttc agcgacaacaacgctgacgagcaagtcatccgcatccgtaccattcgccaagacgaaaag gacgaggacggcgagaagaagattgaagatgacgtgatgctcaagcgactcgaggcccat ctcctggacactttgacgctgcgaggtgtgcctggcgttgaaagggccttcttgaccaag ggcactcgcctcgtggaggccgctgacggatctgagcttgcgctcaaggacgatccccga tgcactcagtggtatctggatactagtggctcagctctccgcgaagtcttggccgtccct ggagttgatcctacgcgaacctacaccaacgacctgtggcagattatcgaggtgtttggt atcgaaggtactcgagctgccttggtgaaggagctgacggctgtgctggcatttgacggt tcctacgtcaaccaccgacacattgccctgctttgtgatgtcatgacgtaccgcggaagt atttctgccgtgacccgtcacggaatcaaccgagcggacacgggtgccctgatgcgatgt tcattcgaggagactgtcgagattctcctcgaggcggctgctacgggtgagcttgacgac tgccgaggcatttctgagaacgtcatgcttggccagatggcccccatgggtactggcaac tttgatgtctaccttgacccgaagatgctggaaacggtcatctcggacaactctcgcatg ggcctcatgcctggcatgcccgtcaaggagggagacgtcgaaggtgcagccacgccgtac gataccggatctcccatgggcgactctggctacctcagcctcaactctcctgctgctgga aacttctcgcccatccagggtgcaggttcggaaacgcctgctggattcggcaccgagtac ggcggcggcggctttggtggcatcgggtccatgagcccatactctatgcgtggagcaacc agcccgttcagcacctcaccgacatcgcctttcagctcgggcatgggtggctactctccg acgtcgcccaacgcgggatactctccgacatctcccatgatcgatggcggaatcgggcga tatgcgacttccccgtcattcagcccttcttccccatccttctcgccgacgtcacccatg ctgcgccctacaagcccagccagtcccaactacagcccgacttcgccaagctactcgccc gcgtctccttcatcgccgagacactactcgcccacgtcgccggctcaattcaactctccc acctcgcccagctactcgcccgctagtcccaactacagcccagcctctcccaacctgcac ggagttggcgctacttctccttcatactctcctgcctctccctcttggtctcccacatct cccgaggcttactcgcccacgagtcccagcttctccaagagccctgggtcgcaacaatct cccaccagccccagctactcgcccacttctccctcattttctccccggacccctggcccg ggagcttctggaaaccaatattcacctaattccccggctaacgactga

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