Talaromyces rugulosus: TRUGW13939_01495
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Entry
TRUGW13939_01495 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
trg
Talaromyces rugulosus
Pathway
trg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRUGW13939_01495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_01495
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TRUGW13939_01495
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TRUGW13939_01495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
EAD9
DUF1192
WKF
Motif
Other DBs
NCBI-GeneID:
55989006
NCBI-ProteinID:
XP_035340588
UniProt:
A0A7H8QKF4
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Position
I:complement(join(4441776..4441836,4441886..4443408,4443475..4443729))
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AA seq
612 aa
AA seq
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MTSRKTQQEIEKTFKKVAEGIASFEGIYEKIRTTTNTAQRDKLEENLKREIKKLQRFRDQ
IKSWAAGNEVKDKTPLLEQRKAIETCMEQFKAVEKEMKTKAYSKEGLSNARLDPKDKEKV
DACDFLSTMVDELQQRIEAMEAEEETISASVKKGKKDQVKANRLADITHISERHKWHVNK
LEMLLRSLQNGMVEVSQVTELKDSIKYYVEDGHNIDYSGEDETLYDDLVIGDEEGQFGGD
NDRVSSQDALSVQDDDSEPRPKSKVDLTTTRRPSTQKSPLPVLAALHPTTTTSATSNPMK
PAPPPARAPGETLKYASAAAAAAASDRGVGIAPLPPPPGASPASTAALPVSKAGSTASPS
VTSVQLASRILSTPEPTERPLRMGSPALSHAASKAASSSTPAPSTPAVEKAAEVGGGSKA
TQATNGSSSANKEEEDSSQESIYHLPPGLQDLIQSFEVTKSRGEAGVSSASVQRLLAASL
NSCPEPGDAEKPRHYKPQTPFNTPLYYPQEPLPIFDDPRLFDTGRIDTDTLFYIFYYQQG
TYRQYLAAKSLKNQSWRFHKQFQTWFQRHEEPKTITEEYEQGTYRFFDYESTWMNRRKAD
FKFIYKYLEDDL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgcgcaagacgcagcaagagatcgaaaagaccttcaaaaaggtcgccgagggc
attgcgagctttgaaggcatctacgagaagatcaggaccacgacgaataccgcccagcgc
gacaagctcgaggagaacctgaagcgggagatcaagaagctgcagcgctttcgagatcag
atcaaatcgtgggccgccggcaatgaagtcaaggacaagacgccgttgcttgagcaaaga
aaagccattgaaacatgtatggaacagttcaaagccgtggaaaaggagatgaagacaaag
gcatactcgaaagagggcctctcgaacgcccgattagaccccaaggacaaggaaaaagtc
gacgcttgcgactttctgtccaccatggttgacgagctgcagcaaaggatcgaggcgatg
gaggccgaggaagagacgatttcggcatcggtgaagaagggcaagaaggatcaagtcaag
gccaatcggctagccgacatcacgcacatctcggagcggcataagtggcacgtcaacaag
ctggaaatgctgcttcggtcgctccaaaatggcatggtcgaagtatcgcaggttactgaa
ttgaaggacagcatcaaatactacgtggaagacgggcacaacatcgactactcgggcgag
gacgagacgctctacgatgatttggtcattggagacgaggagggccaatttggcggtgac
aacgaccgagtatcgtcacaggatgcactgtcggtgcaagacgacgactccgaaccacga
cccaaatcgaaggttgacctgaccacgacacgacgcccatcgacccagaaatcgcctctc
ccggttcttgcagccttgcacccgaccacaacgacatcggccacttcgaatcccatgaag
cccgctccaccgccagcacgcgcaccaggtgagacgctgaaatacgcatcggcagcggca
gctgcagcagcaagcgatcgcggtgtcgggatagctcctttgcctcctccaccgggcgcc
agtccggcatcgacagcggcactcccggtgtccaaagccggctcaacggcgtctcccagt
gtgacctctgtccagctagcgtcgcggatactctcaacaccagagccgacggaaagacca
ctgcgtatgggatcgccggcgctctcgcacgctgccagcaaagccgcatcatcatcaacc
ccggctccgtcaacaccggctgtggagaaggcagcagaagtgggcggtggttcgaaagca
acgcaggcaacaaacggatctagtagtgccaataaagaagaggaggattcatcacaggaa
tcgatctaccacctcccaccagggctccaagacttgattcaatcgtttgaagtaaccaag
agtcgaggagaagcaggcgtgtcatcggcgtcggtgcaaagactgcttgcggcttctctc
aactcgtgtccagagcccggtgacgccgaaaagccgcgacattacaagccacagacgccg
ttcaacacgccgctgtattacccacaagaaccgctcccgatctttgatgatccgcgattg
ttcgacacggggcggatagacacggacacgctcttctacatcttctactaccaacaaggg
acgtaccggcagtacctggcggccaagtcgctcaagaaccagagctggcggttccacaag
caattccaaacgtggttccagcgacacgaagagcccaagacgatcacagaagagtacgag
caagggacgtatcggttttttgactacgaaagcacatggatgaaccgtcgaaaagcagac
ttcaagtttatctacaagtacctagaggacgatctttga
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